GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002329-TA|BGIBMGA002329-PA|undefined
         (460 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_10561| Best HMM Match : No HMM Matches (HMM E-Value=.)              35   0.16 
SB_35274| Best HMM Match : rve (HMM E-Value=7.2e-21)                   31   1.9  
SB_58456| Best HMM Match : Transposase_23 (HMM E-Value=8.9)            30   4.5  
SB_56522| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.6e-30)        29   5.9  

>SB_10561| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 376

 Score = 34.7 bits (76), Expect = 0.16
 Identities = 28/122 (22%), Positives = 48/122 (39%), Gaps = 5/122 (4%)

Query: 170 PLSPCMADGKCTKRYPRPLVAETVTGNDGYPVYRRRSKENNGRTIKVKVQNQEIEIGNEF 229
           PL+PC      ++   +P+    V G+    +  R  +E     +K + +NQ     N  
Sbjct: 12  PLNPCFIAEGLSRLGMKPVFVSAVGGDSLGALLLRHCEEFR---LKAQTENQVANGANIA 68

Query: 230 IVPYCPLLSRIFETHANVESCHSAKSIKYLCKYVTKGSDMAVFGIASENANDEISNFQMG 289
             PY P L R+  T   +++    ++  Y       GS  A  G      +D+IS   + 
Sbjct: 69  TTPYYPFLDRVGRTKRGIQTFQQCETGTYSAIISEDGSFHAAVG--DMEIHDKISQEMIA 126

Query: 290 RY 291
            Y
Sbjct: 127 GY 128


>SB_35274| Best HMM Match : rve (HMM E-Value=7.2e-21)
          Length = 803

 Score = 31.1 bits (67), Expect = 1.9
 Identities = 21/87 (24%), Positives = 36/87 (41%), Gaps = 4/87 (4%)

Query: 273 GIASENANDEIS-NFQMGRYVSTNEALWRLLSFQIHERYPTVVHLAVHLENGQRVYFTEA 331
           G   EN N+E S   ++   V   EA  +++  Q+HE    ++   +    G R+++   
Sbjct: 165 GAKLENTNEEPSIKRKLRNDVELREAYEKIVRDQLHEG---IIETVIDKSRGDRIFYMPH 221

Query: 332 NAAQRAERPPSTTLTSFFAMCEADPFA 358
               RA    +     F A C+  P A
Sbjct: 222 KPVVRANAQTTKVRMVFDASCKPHPLA 248


>SB_58456| Best HMM Match : Transposase_23 (HMM E-Value=8.9)
          Length = 130

 Score = 29.9 bits (64), Expect = 4.5
 Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 1/62 (1%)

Query: 196 NDGYPVYRRRSKENNGRTIKVKVQNQEIEIGNEFIVPYCPLLSRIFETHANVESCHSAKS 255
           N G P     S+E   + ++  V+N+ + I +E  +P      +IF T     S HS +S
Sbjct: 69  NPGNPTGSILSEETIKKVLEFSVKNRLVVIADEVFIPLARSTDKIF-TRKEPNSSHSEES 127

Query: 256 IK 257
            K
Sbjct: 128 SK 129


>SB_56522| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.6e-30)
          Length = 3071

 Score = 29.5 bits (63), Expect = 5.9
 Identities = 11/26 (42%), Positives = 21/26 (80%)

Query: 24   QNLSEERQNIIRENARLRQRVSTRRS 49
            +++S+ER N++R+  RLR+ VST ++
Sbjct: 1638 ESVSKERDNLLRDVNRLREEVSTNKT 1663


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.320    0.134    0.418 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,764,149
Number of Sequences: 59808
Number of extensions: 661105
Number of successful extensions: 1212
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1211
Number of HSP's gapped (non-prelim): 4
length of query: 460
length of database: 16,821,457
effective HSP length: 85
effective length of query: 375
effective length of database: 11,737,777
effective search space: 4401666375
effective search space used: 4401666375
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 62 (29.1 bits)