GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002329-TA|BGIBMGA002329-PA|undefined
         (460 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    24   2.3  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   7.1  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   9.4  

>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 24.2 bits (50), Expect = 2.3
 Identities = 12/37 (32%), Positives = 17/37 (45%), Gaps = 1/37 (2%)

Query: 348 FFAMCEADPFAATLMYVEMPKYYTWNQSTKKFQRRKQ 384
           +  MC    FAA L Y  +  Y  W    KK  ++K+
Sbjct: 307 YLVMCFVFVFAALLEYAAV-NYTYWGARAKKKSKKKE 342


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 8/30 (26%), Positives = 16/30 (53%)

Query: 54  NRLAFQYDPTANYSDDENLDIGPMTTICRY 83
           + + FQ+DP      DEN+++  +  +  Y
Sbjct: 189 DEMIFQWDPDVPLVVDENIELPQLQLVKNY 218


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 11/41 (26%), Positives = 22/41 (53%)

Query: 31   QNIIRENARLRQRVSTRRSLASYNRLAFQYDPTANYSDDEN 71
            Q++ R+N R  +  S      ++N  + +YD  AN + +E+
Sbjct: 1778 QSMPRQNGRYSRVPSQGGGSGTHNVFSPEYDDPANCAPEED 1818


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.320    0.134    0.418 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 133,512
Number of Sequences: 429
Number of extensions: 5688
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 6
Number of HSP's gapped (non-prelim): 3
length of query: 460
length of database: 140,377
effective HSP length: 60
effective length of query: 400
effective length of database: 114,637
effective search space: 45854800
effective search space used: 45854800
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 45 (22.2 bits)