GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002328-TA|BGIBMGA002328-PA|IPR000875|Cecropin,
IPR004117|Olfactory receptor, Drosophila
         (375 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC32F12.10 |||phosphoglucomutase |Schizosaccharomyces pombe|ch...    29   1.4  
SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein |Schizosacch...    27   3.3  
SPAC24H6.06 |sld3|mug175|DNA replication pre-initiation complex ...    27   4.3  
SPBC16E9.14c |||membrane transporter|Schizosaccharomyces pombe|c...    26   10.0 

>SPBC32F12.10 |||phosphoglucomutase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 554

 Score = 28.7 bits (61), Expect = 1.4
 Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 1/50 (2%)

Query: 13  DFNIKY-LFYVGLWPSNEAKRIEKIAYKIYEYQLHVLSLIFLVTTGIGTY 61
           DF IKY L   G  P +  ++I  I   I EY++  +  + L TTG+  Y
Sbjct: 122 DFGIKYNLGNGGPAPESVTEKIYSITKTISEYKMVKIPPLDLTTTGVRRY 171


>SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1294

 Score = 27.5 bits (58), Expect = 3.3
 Identities = 15/68 (22%), Positives = 37/68 (54%), Gaps = 4/68 (5%)

Query: 201 LVDLQNKIRDLRFATGNVEKLRDDFKLIVKKHVRLLGYSKVIEMIFKEYFFIQNMAVTAE 260
           L++  N++R+ +  T  VE L+    L++     ++   + + + F ++F I+++ V+  
Sbjct: 702 LINFTNQLRNTKMFTKTVEALQ----LLLNSLRDIINGKQSLNINFSDFFRIEDLLVSLS 757

Query: 261 LCLNAMMV 268
             L+ +MV
Sbjct: 758 KILSVLMV 765


>SPAC24H6.06 |sld3|mug175|DNA replication pre-initiation complex
           subunit Sld3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 668

 Score = 27.1 bits (57), Expect = 4.3
 Identities = 21/88 (23%), Positives = 40/88 (45%), Gaps = 2/88 (2%)

Query: 65  KDIIALLTNLDKTLVAYNFVFKVIVFVYKREELRKLIEQIVQSGDQITEDRKALMAKLVI 124
           +D+ +LL +L  +      + K  V  Y ++ + K  +  V+  + + E  KAL+ +L+ 
Sbjct: 206 RDVKSLLDHLYNSYFYQLLMTKTPVVFYVKQMVGKTRQLAVEVHNHVEE--KALVDELLK 263

Query: 125 VLTGISTVIITAFSCLALFEGEMTIDAW 152
            L  + +V       L  FE  +   AW
Sbjct: 264 FLDNLKSVDDRKSRLLQCFESHLNYKAW 291


>SPBC16E9.14c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 386

 Score = 25.8 bits (54), Expect = 10.0
 Identities = 14/62 (22%), Positives = 28/62 (45%)

Query: 10  HFFDFNIKYLFYVGLWPSNEAKRIEKIAYKIYEYQLHVLSLIFLVTTGIGTYKNHKDIIA 69
           H  + N ++   + L PS     +  + Y++  +  H+LSL   VT  +  +   K +  
Sbjct: 235 HIRELNSRFFHGLTLVPSLILVLLLSLGYQVGSFLSHLLSLTIAVTALVNGFSIAKSLAL 294

Query: 70  LL 71
           +L
Sbjct: 295 ML 296


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.327    0.140    0.408 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,457,624
Number of Sequences: 5004
Number of extensions: 53865
Number of successful extensions: 190
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 189
Number of HSP's gapped (non-prelim): 4
length of query: 375
length of database: 2,362,478
effective HSP length: 74
effective length of query: 301
effective length of database: 1,992,182
effective search space: 599646782
effective search space used: 599646782
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 54 (25.8 bits)