GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002328-TA|BGIBMGA002328-PA|IPR000875|Cecropin,
IPR004117|Olfactory receptor, Drosophila
         (375 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1153 + 24398122-24398747,24399326-24399542,24399741-244002...    31   1.5  
01_01_1022 - 8064032-8064657,8064823-8064893,8065926-8066047,806...    29   8.0  

>07_03_1153 +
           24398122-24398747,24399326-24399542,24399741-24400220,
           24400801-24401007,24401112-24401249,24401317-24401538
          Length = 629

 Score = 31.1 bits (67), Expect = 1.5
 Identities = 14/54 (25%), Positives = 31/54 (57%)

Query: 80  AYNFVFKVIVFVYKREELRKLIEQIVQSGDQITEDRKALMAKLVIVLTGISTVI 133
           ++N + K +V   + +   KLIE+++Q+G Q  ++   L+  L+I L  + + +
Sbjct: 186 SHNLILKSMVQAQEADGAEKLIERMLQTGTQPDDESYNLVVNLLIKLNRVDSTL 239


>01_01_1022 -
           8064032-8064657,8064823-8064893,8065926-8066047,
           8066540-8066689,8067153-8067179,8067485-8067552,
           8067679-8067874
          Length = 419

 Score = 28.7 bits (61), Expect = 8.0
 Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 3/44 (6%)

Query: 127 TGISTVIITAFSCLALFEGEMTIDAWM---PFDPMKSKMNLFAA 167
           +G+STVI+    CL++  G +  D  +   P+D + S +  FAA
Sbjct: 183 SGLSTVILLTIRCLSMDAGAVEWDIGLVPAPYDDLLSLLKRFAA 226


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.327    0.140    0.408 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,615,166
Number of Sequences: 37544
Number of extensions: 296302
Number of successful extensions: 818
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 817
Number of HSP's gapped (non-prelim): 2
length of query: 375
length of database: 14,793,348
effective HSP length: 83
effective length of query: 292
effective length of database: 11,677,196
effective search space: 3409741232
effective search space used: 3409741232
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 61 (28.7 bits)