GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002328-TA|BGIBMGA002328-PA|IPR000875|Cecropin,
IPR004117|Olfactory receptor, Drosophila
         (375 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF026213-3|AAP68945.1|  161|Caenorhabditis elegans Hypothetical ...    31   1.0  
U97001-5|AAB52260.3| 1592|Caenorhabditis elegans Temporarily ass...    31   1.3  
AF039042-1|AAP40514.1|  368|Caenorhabditis elegans Serpentine re...    30   2.3  
U23527-1|AAC46575.2| 1147|Caenorhabditis elegans Neuronal igcam ...    30   3.1  
AC024882-1|AAF60940.1|  369|Caenorhabditis elegans Hypothetical ...    29   4.1  

>AF026213-3|AAP68945.1|  161|Caenorhabditis elegans Hypothetical
           protein F08F1.4b protein.
          Length = 161

 Score = 31.5 bits (68), Expect = 1.0
 Identities = 22/80 (27%), Positives = 40/80 (50%), Gaps = 5/80 (6%)

Query: 43  YQLHVLSLIFLVTTGIGTYKNHKDIIALLTNLDKTL---VAYNFVFKVIVFVYKREELRK 99
           +  +VLSLI +  T + T K   DII +  N + T+   + Y F+ K+    +K   + K
Sbjct: 82  FTFNVLSLILMQQTVVATGKQCMDIITIRNNENDTITPKILYGFLQKLFFLKFKTSVIMK 141

Query: 100 LIEQIVQSGDQITEDRKALM 119
             EQ  +S     ++R+ ++
Sbjct: 142 --EQDSKSLKYRVQERRVVL 159


>U97001-5|AAB52260.3| 1592|Caenorhabditis elegans Temporarily assigned
            gene nameprotein 59 protein.
          Length = 1592

 Score = 31.1 bits (67), Expect = 1.3
 Identities = 17/38 (44%), Positives = 23/38 (60%), Gaps = 1/38 (2%)

Query: 189  IVCSLILYLRDQLVDLQNKIRDLRFATGNVEKLRD-DF 225
            +VC   LYL D  VD QNK++D++     V  +RD DF
Sbjct: 1051 VVCDFKLYLYDCTVDRQNKMQDVKNEIRLVLDMRDPDF 1088


>AF039042-1|AAP40514.1|  368|Caenorhabditis elegans Serpentine
           receptor, class w protein103 protein.
          Length = 368

 Score = 30.3 bits (65), Expect = 2.3
 Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 1/54 (1%)

Query: 83  FVFKVIVFVYKREELRKLIEQIVQSGDQITEDRKALMAKLVIVLTGISTVIITA 136
           F    ++ ++  ++L+K  E I +      ED+K L  KL+I +T IS +II A
Sbjct: 231 FSILTVLLLHALQKLKKSGESIGRKTGSTNEDKKDLSTKLIIFMT-ISFLIIEA 283


>U23527-1|AAC46575.2| 1147|Caenorhabditis elegans Neuronal igcam
           protein 1, isoform a protein.
          Length = 1147

 Score = 29.9 bits (64), Expect = 3.1
 Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 1/77 (1%)

Query: 60  TYKNHKDIIALLTNLDKTLVAYNFVFK-VIVFVYKREELRKLIEQIVQSGDQITEDRKAL 118
           T K+ K ++ ++T  + T  A   V K  +V+  K   + K IE  V  GD +  +    
Sbjct: 225 TRKSPKPVLIIVTESNSTEKAPTEVIKPALVYPAKETTIDKPIELAVAEGDDVVLECVIN 284

Query: 119 MAKLVIVLTGISTVIIT 135
           MAK+V +    +T  +T
Sbjct: 285 MAKIVWIKHNDTTPNVT 301


>AC024882-1|AAF60940.1|  369|Caenorhabditis elegans Hypothetical
           protein Y9C9A.17 protein.
          Length = 369

 Score = 29.5 bits (63), Expect = 4.1
 Identities = 20/75 (26%), Positives = 35/75 (46%)

Query: 122 LVIVLTGISTVIITAFSCLALFEGEMTIDAWMPFDPMKSKMNLFAASQILAATFVVPCGY 181
           ++ + T I+  II+A S LAL       + W P        N+  AS I+ + ++   G 
Sbjct: 152 IIWLATPIAVGIISALSGLALRSDSELANYWRPILNDSFDFNIDKASFIIFSYWITVNGA 211

Query: 182 RAFAMLGIVCSLILY 196
            +  +   VC+L L+
Sbjct: 212 SSLNVRDFVCTLCLH 226


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.327    0.140    0.408 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,712,424
Number of Sequences: 27539
Number of extensions: 282315
Number of successful extensions: 1115
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1113
Number of HSP's gapped (non-prelim): 5
length of query: 375
length of database: 12,573,161
effective HSP length: 83
effective length of query: 292
effective length of database: 10,287,424
effective search space: 3003927808
effective search space used: 3003927808
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 60 (28.3 bits)