GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002328-TA|BGIBMGA002328-PA|IPR000875|Cecropin,
IPR004117|Olfactory receptor, Drosophila
         (375 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory...    28   0.11 
AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    24   1.8  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    24   1.8  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    24   1.8  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   9.8  
AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.     22   9.8  

>AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory
           receptor 2 protein.
          Length = 210

 Score = 28.3 bits (60), Expect = 0.11
 Identities = 20/99 (20%), Positives = 34/99 (34%), Gaps = 1/99 (1%)

Query: 221 LRDDFKLIVKKHVRLLGYSKVIEMIFKEYFFIQNMAVTAELCLNAMMVSVVGLEQKTXXX 280
           +R   K  V++H  ++     I   +     +  +  T  L L A   + +     T   
Sbjct: 99  VRSAIKYWVERHKHIVRLVTAIGDAYGVALLLHMLTTTITLTLLAYQATKIHAVD-TYAA 157

Query: 281 XXXXXXXXXXXXXYIYCYLGNELIVQSEGIAMAAYESSW 319
                        ++ C  GN LI +S  +  AAY   W
Sbjct: 158 SVVGYLLYSLGQVFMLCIFGNRLIEESSSVMEAAYSCHW 196


>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 24.2 bits (50), Expect = 1.8
 Identities = 15/52 (28%), Positives = 25/52 (48%)

Query: 201 LVDLQNKIRDLRFATGNVEKLRDDFKLIVKKHVRLLGYSKVIEMIFKEYFFI 252
           L+D+    R       N E++  D KLI K ++R   +  +I  I  +Y F+
Sbjct: 133 LIDIVVNFRTGIMQQDNAEQVILDPKLIAKHYLRTWFFLDLISSIPLDYIFL 184


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 24.2 bits (50), Expect = 1.8
 Identities = 15/52 (28%), Positives = 25/52 (48%)

Query: 201 LVDLQNKIRDLRFATGNVEKLRDDFKLIVKKHVRLLGYSKVIEMIFKEYFFI 252
           L+D+    R       N E++  D KLI K ++R   +  +I  I  +Y F+
Sbjct: 133 LIDIVVNFRTGIMQQDNAEQVILDPKLIAKHYLRTWFFLDLISSIPLDYIFL 184


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 24.2 bits (50), Expect = 1.8
 Identities = 15/52 (28%), Positives = 25/52 (48%)

Query: 201 LVDLQNKIRDLRFATGNVEKLRDDFKLIVKKHVRLLGYSKVIEMIFKEYFFI 252
           L+D+    R       N E++  D KLI K ++R   +  +I  I  +Y F+
Sbjct: 133 LIDIVVNFRTGIMQQDNAEQVILDPKLIAKHYLRTWFFLDLISSIPLDYIFL 184


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.8 bits (44), Expect = 9.8
 Identities = 8/20 (40%), Positives = 14/20 (70%)

Query: 94  REELRKLIEQIVQSGDQITE 113
           +EE+R L+++ +Q    ITE
Sbjct: 447 QEEIRTLLDESIQRKSDITE 466



 Score = 21.8 bits (44), Expect = 9.8
 Identities = 9/24 (37%), Positives = 14/24 (58%)

Query: 40   IYEYQLHVLSLIFLVTTGIGTYKN 63
            IYEYQ+H  +L  ++   +   KN
Sbjct: 1010 IYEYQIHPKTLNEVLQADMNALKN 1033


>AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.
          Length = 238

 Score = 21.8 bits (44), Expect = 9.8
 Identities = 8/20 (40%), Positives = 14/20 (70%)

Query: 94  REELRKLIEQIVQSGDQITE 113
           +EE+R L+++ +Q    ITE
Sbjct: 153 QEEIRTLLDESIQRKSDITE 172


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.327    0.140    0.408 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 92,008
Number of Sequences: 429
Number of extensions: 3634
Number of successful extensions: 12
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 5
Number of HSP's gapped (non-prelim): 7
length of query: 375
length of database: 140,377
effective HSP length: 59
effective length of query: 316
effective length of database: 115,066
effective search space: 36360856
effective search space used: 36360856
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 44 (21.8 bits)