GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002327-TA|BGIBMGA002327-PA|IPR000276|Rhodopsin-like GPCR
superfamily, IPR001671|Melanocortin/ACTH receptor
         (109 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC144.10c |gwt1|mug59|pig-W|Schizosaccharomyces pombe|chr 1|||...    27   0.66 
SPAC2E1P5.02c |mug109||sequence orphan|Schizosaccharomyces pombe...    26   1.2  
SPAC26H5.07c |||seven transmembrane receptor-like protein|Schizo...    24   4.7  
SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual    24   6.2  

>SPAC144.10c |gwt1|mug59|pig-W|Schizosaccharomyces pombe|chr
          1|||Manual
          Length = 459

 Score = 27.1 bits (57), Expect = 0.66
 Identities = 10/24 (41%), Positives = 16/24 (66%)

Query: 21 LGIIVGAFLLCWLPFFLWYVTTNV 44
          LG +V  F+ C +P F+ YV++ V
Sbjct: 50 LGFLVEFFIFCLIPLFVIYVSSKV 73


>SPAC2E1P5.02c |mug109||sequence orphan|Schizosaccharomyces
          pombe|chr 1|||Manual
          Length = 163

 Score = 26.2 bits (55), Expect = 1.2
 Identities = 7/10 (70%), Positives = 9/10 (90%)

Query: 30 LCWLPFFLWY 39
          +CWL FF+WY
Sbjct: 70 ICWLYFFIWY 79


>SPAC26H5.07c |||seven transmembrane receptor-like
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 505

 Score = 24.2 bits (50), Expect = 4.7
 Identities = 8/21 (38%), Positives = 12/21 (57%)

Query: 80  DFRDAFKNTLMCALPCLFGCW 100
           D+   F N ++ A+ CL G W
Sbjct: 177 DYPHLFLNPILLAINCLIGIW 197


>SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1496

 Score = 23.8 bits (49), Expect = 6.2
 Identities = 11/34 (32%), Positives = 15/34 (44%)

Query: 76  YFNRDFRDAFKNTLMCALPCLFGCWKDTGTAQFV 109
           +F  D    +   +   LP LF  W+D GT   V
Sbjct: 204 HFEEDGELNYNKAIDGFLPDLFSFWRDLGTHHLV 237


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.330    0.143    0.513 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 532,515
Number of Sequences: 5004
Number of extensions: 21546
Number of successful extensions: 44
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 40
Number of HSP's gapped (non-prelim): 4
length of query: 109
length of database: 2,362,478
effective HSP length: 64
effective length of query: 45
effective length of database: 2,042,222
effective search space: 91899990
effective search space used: 91899990
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.9 bits)
S2: 48 (23.4 bits)