Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002327-TA|BGIBMGA002327-PA|IPR000276|Rhodopsin-like GPCR
superfamily, IPR001671|Melanocortin/ACTH receptor
(109 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0481 + 29361542-29361669,29362091-29362341,29362820-293630... 29 1.1
02_05_0215 + 26833213-26833599 29 1.1
11_01_0673 - 5491694-5493102,5493386-5493995 27 2.4
05_03_0110 + 8500204-8500460,8502544-8502612,8502725-8502790,850... 27 4.3
11_01_0402 - 3039890-3040009,3040442-3040496,3041155-3041325,304... 25 9.8
06_03_1189 + 28271185-28271394,28272421-28273326 25 9.8
04_01_0578 + 7507204-7507436,7509588-7509618,7509634-7509774,750... 25 9.8
01_03_0088 + 12327339-12328092,12329474-12329601,12330249-123304... 25 9.8
>02_05_0481 +
29361542-29361669,29362091-29362341,29362820-29363002,
29363099-29363206,29363583-29363697,29363781-29364819,
29364904-29365014,29365268-29365326,29366601-29366763,
29367162-29367435,29367530-29367680,29367766-29367877,
29367978-29368143,29368261-29368331,29368474-29368565,
29368721-29368883,29369134-29369205,29369236-29369263,
29369519-29369910,29369991-29370106,29370201-29370498,
29370820-29371139,29371332-29371590,29371985-29372302,
29372423-29372527,29372648-29372776,29374001-29374381,
29374467-29374604,29374949-29375185,29375264-29375569
Length = 2094
Score = 28.7 bits (61), Expect = 1.1
Identities = 17/64 (26%), Positives = 30/64 (46%), Gaps = 5/64 (7%)
Query: 11 WRAEHKAARTLG--IIVGAFLLCWLPFFLWYVTTNVCGEPCETPSVVVGVLFWIGYFNSA 68
WR + ++++ + +++ LLC F YVTT +PS G F + + A
Sbjct: 119 WRTQWQSSKAVAYLLLLAVGLLCAYEFCAVYVTTGASASELNSPS---GFFFGVSAISLA 175
Query: 69 LNPL 72
+N L
Sbjct: 176 INML 179
>02_05_0215 + 26833213-26833599
Length = 128
Score = 28.7 bits (61), Expect = 1.1
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 27 AFLLCWLPFFLWYVTTNVCGEPCETPS 53
AFLL L L++ + CG+ C TPS
Sbjct: 5 AFLLVALNLVLFFTVASACGKYCPTPS 31
>11_01_0673 - 5491694-5493102,5493386-5493995
Length = 672
Score = 27.5 bits (58), Expect = 2.4
Identities = 18/44 (40%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Query: 6 AAGKSWRAEHKAARTLGIIVGAFLLCWLPFFL-WYVTTNVCGEP 48
A+ K+ R A T IVG LL + FFL W + N CG P
Sbjct: 380 ASTKNKRKPVIAVVTTASIVGFGLLMLVMFFLIWRIKFNCCGVP 423
>05_03_0110 +
8500204-8500460,8502544-8502612,8502725-8502790,
8502885-8502963,8504270-8504390,8504486-8504581,
8505403-8505515,8505612-8505689,8507777-8507893,
8508194-8508293,8508463-8508563,8509093-8509110
Length = 404
Score = 26.6 bits (56), Expect = 4.3
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 4/51 (7%)
Query: 52 PSVVVGVLFWIGYFNSA----LNPLIYAYFNRDFRDAFKNTLMCALPCLFG 98
P++V G F++ YF + LN I+ YF + + + L+ L CL G
Sbjct: 98 PALVTGFFFFMWYFLNVIFNILNKKIFDYFPYPYFVSVSHLLVGVLYCLVG 148
>11_01_0402 -
3039890-3040009,3040442-3040496,3041155-3041325,
3044958-3045949
Length = 445
Score = 25.4 bits (53), Expect = 9.8
Identities = 8/14 (57%), Positives = 9/14 (64%)
Query: 87 NTLMCALPCLFGCW 100
NTL C +P FG W
Sbjct: 275 NTLFCKMPICFGAW 288
>06_03_1189 + 28271185-28271394,28272421-28273326
Length = 371
Score = 25.4 bits (53), Expect = 9.8
Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Query: 53 SVVVGVLFWIGYFNSALNPLIYAY-FNRDFRDAFKNTLMCA 92
S G+ + + S+L PLIY Y F R+ + + + +M A
Sbjct: 191 SPAAGMASSLAWAGSSLAPLIYPYFFRRELLELWSSLIMAA 231
>04_01_0578 +
7507204-7507436,7509588-7509618,7509634-7509774,
7509883-7509972,7511382-7511401,7512111-7512202,
7512790-7512858,7513400-7513560
Length = 278
Score = 25.4 bits (53), Expect = 9.8
Identities = 10/37 (27%), Positives = 17/37 (45%)
Query: 34 PFFLWYVTTNVCGEPCETPSVVVGVLFWIGYFNSALN 70
P + ++TT G P E P ++G W + +N
Sbjct: 187 PLIVEFLTTTRHGHPTEIPCNLIGEASWTSTWKGKIN 223
>01_03_0088 +
12327339-12328092,12329474-12329601,12330249-12330474,
12332638-12332765,12332880-12333033,12333408-12333841
Length = 607
Score = 25.4 bits (53), Expect = 9.8
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 73 IYAYFNRDFRDAFKNTLMCALPC 95
IY Y RD RDAF+ + + + C
Sbjct: 374 IYIYLVRDVRDAFEGSDLVKIDC 396
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.330 0.143 0.513
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,429,522
Number of Sequences: 37544
Number of extensions: 130104
Number of successful extensions: 304
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 300
Number of HSP's gapped (non-prelim): 8
length of query: 109
length of database: 14,793,348
effective HSP length: 72
effective length of query: 37
effective length of database: 12,090,180
effective search space: 447336660
effective search space used: 447336660
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.9 bits)
S2: 53 (25.4 bits)
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