GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002326-TA|BGIBMGA002326-PA|IPR000276|Rhodopsin-like GPCR
superfamily
         (382 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0977 - 9900073-9900521,9900594-9900698,9900770-9900959,990...    30   2.7  
10_06_0152 - 11280532-11281427,11281501-11281971,11282512-11282569     30   3.6  
01_01_0029 + 215212-215769,215884-216345                               30   3.6  
10_08_1058 + 22608852-22609172,22609257-22610651                       29   8.2  
05_05_0036 - 21758409-21758531,21758891-21759206,21759964-217611...    29   8.2  
05_03_0233 - 10704018-10704118,10704217-10705411                       29   8.2  
04_02_0012 + 8537124-8537464,8537558-8537693,8538811-8538861,854...    29   8.2  

>12_01_0977 -
           9900073-9900521,9900594-9900698,9900770-9900959,
           9901035-9901093,9901297-9901688,9901770-9902059,
           9902146-9903030
          Length = 789

 Score = 30.3 bits (65), Expect = 2.7
 Identities = 25/86 (29%), Positives = 39/86 (45%), Gaps = 8/86 (9%)

Query: 281 RRPSDISPNYSTFTEVGPEETEFGEVVMSLGDICPSKEASPRKSVNVSCDTASSGYCSGG 340
           R+PSDI P   T  E  P  TE     +S  D  P+ E+ P      + ++  +G     
Sbjct: 392 RKPSDIDP---TGKEPDPAATEPN---LSK-DAEPTAESQPTAESQPTAESQPTG-AQAS 443

Query: 341 SNKRSSSGQPPYGWRPSCSSAIATRD 366
            +K + S QPP G + + +    TR+
Sbjct: 444 DDKANPSDQPPTGNQSAATETATTRE 469


>10_06_0152 - 11280532-11281427,11281501-11281971,11282512-11282569
          Length = 474

 Score = 29.9 bits (64), Expect = 3.6
 Identities = 15/56 (26%), Positives = 29/56 (51%), Gaps = 1/56 (1%)

Query: 291 STFTEVGPEETE-FGEVVMSLGDICPSKEASPRKSVNVSCDTASSGYCSGGSNKRS 345
           ST T    EE   F  V++  GD+ P ++AS  + ++  CD   +  C+   ++++
Sbjct: 16  STITNYAKEEMGGFTGVIVFSGDVAPERDASLEEFLDSCCDQIGAMRCARNGDEQT 71


>01_01_0029 + 215212-215769,215884-216345
          Length = 339

 Score = 29.9 bits (64), Expect = 3.6
 Identities = 12/43 (27%), Positives = 27/43 (62%)

Query: 79  HRKLRVLTNYYVVSLAVADMLVALCAMTFNASSELTDAWLFGP 121
           +++ + +  YY +S++ ADML A  + + N S+++  + +F P
Sbjct: 277 NKRHKTMEEYYSISISTADMLHASSSTSNNKSTQINFSSIFEP 319


>10_08_1058 + 22608852-22609172,22609257-22610651
          Length = 571

 Score = 28.7 bits (61), Expect = 8.2
 Identities = 16/65 (24%), Positives = 27/65 (41%)

Query: 159 YPVTMTHRTVCFMLANVWLWPAFISFVPIFKGWYTTEQHRQYRKDHPDVCIFKVNMVYAI 218
           Y  T+ H T+ F  A+V  W      VP+   +       +YR     +  +   +V   
Sbjct: 54  YLATVLHGTLAFNAAHVDTWNGTTFIVPVIGAFLADSYWGKYRTILASLLFYLAGLVLLT 113

Query: 219 VSSSV 223
           VS++V
Sbjct: 114 VSAAV 118


>05_05_0036 -
           21758409-21758531,21758891-21759206,21759964-21761121,
           21761236-21761333
          Length = 564

 Score = 28.7 bits (61), Expect = 8.2
 Identities = 13/39 (33%), Positives = 21/39 (53%)

Query: 197 HRQYRKDHPDVCIFKVNMVYAIVSSSVSFWIPSLVMISM 235
           H+QYR D   V +  V+++   +SS   FW P    +S+
Sbjct: 326 HQQYRIDGKLVAVGVVDILPKCLSSKYLFWDPDFAFLSL 364


>05_03_0233 - 10704018-10704118,10704217-10705411
          Length = 431

 Score = 28.7 bits (61), Expect = 8.2
 Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 4/47 (8%)

Query: 95  VADMLVALCAMTFNASSELTDAWLFGPLACDIFNSLDVYFSSASILH 141
           VA+++++ C  +F   S +   W   PL C  F+  D+ FSS  +LH
Sbjct: 183 VAELMMS-CLRSF---SSVNGRWEEKPLVCPQFSRGDMVFSSGGMLH 225


>04_02_0012 +
           8537124-8537464,8537558-8537693,8538811-8538861,
           8540190-8540413,8540491-8540715,8541520-8541619,
           8541703-8541763,8543029-8543100,8543183-8543406
          Length = 477

 Score = 28.7 bits (61), Expect = 8.2
 Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 4/55 (7%)

Query: 282 RPSDISPNYSTFTEVGPEETEFGEVVMSLGDICPSKEASPRKSVNVSCDTASSGY 336
           R S   P+ S+ ++  P  ++F E    L   C +    P K V VS DT+SSG+
Sbjct: 176 RASFYIPSMSSTSQAVPCNSQFCE----LRKECSTTSQCPYKMVYVSADTSSSGF 226


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.324    0.134    0.419 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,965,584
Number of Sequences: 37544
Number of extensions: 441165
Number of successful extensions: 1688
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1684
Number of HSP's gapped (non-prelim): 9
length of query: 382
length of database: 14,793,348
effective HSP length: 83
effective length of query: 299
effective length of database: 11,677,196
effective search space: 3491481604
effective search space used: 3491481604
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 61 (28.7 bits)