GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002325-TA|BGIBMGA002325-PA|IPR000276|Rhodopsin-like GPCR
superfamily
         (393 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|ch...    29   1.5  
SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|c...    29   1.5  
SPAC1687.02 |||CAAX prenyl protease |Schizosaccharomyces pombe|c...    28   2.0  
SPAC22H10.03c |kap114||karyopherin Kap14|Schizosaccharomyces pom...    28   2.0  
SPAC144.10c |gwt1|mug59|pig-W|Schizosaccharomyces pombe|chr 1|||...    28   2.6  
SPCC965.13 |||membrane transporter|Schizosaccharomyces pombe|chr...    27   3.5  
SPBC582.06c |mcp6|hrs1, mug3|meiosis specific coiled-coil protei...    27   4.6  

>SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 642

 Score = 28.7 bits (61), Expect = 1.5
 Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 4/60 (6%)

Query: 161 LSPITISYVPIFMGWYTTNDYLQT---ASSDQCEFKVNKPY-AVISSSISFWIPCTIMIF 216
           + P+ IS +   +  Y T  Y+ T   A+ D   F +  P+ A I SSI FW+ C  +++
Sbjct: 277 ICPMVISLIIAPLWIYFTFKYITTCIHANIDIVHFYLETPFLAGIFSSIFFWVWCHSLLY 336


>SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 796

 Score = 28.7 bits (61), Expect = 1.5
 Identities = 14/44 (31%), Positives = 26/44 (59%), Gaps = 3/44 (6%)

Query: 77  LAFADILVAMVVMPFNFSVQFYQGWVFGPIICDLWNSSDVYFTS 120
           L+FA +L  +++MP N   + ++G  FG I   +   S+ +F+S
Sbjct: 108 LSFASLLGVLIIMPVN---KHFRGDAFGNITLSMPAKSEYFFSS 148


>SPAC1687.02 |||CAAX prenyl protease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 271

 Score = 28.3 bits (60), Expect = 2.0
 Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%)

Query: 156 LAATWLSPITISYVPIFMGWYTTNDYLQTAS 186
           +AA   + +  SY  +F GWYTT+ +L T S
Sbjct: 176 IAAALQTVVQFSYTTVF-GWYTTHLFLSTHS 205


>SPAC22H10.03c |kap114||karyopherin Kap14|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 986

 Score = 28.3 bits (60), Expect = 2.0
 Identities = 11/43 (25%), Positives = 23/43 (53%)

Query: 99  QGWVFGPIICDLWNSSDVYFTSTSILHLCCISVDRYYAIVKPL 141
           QG     ++  +W  + VYF++   + + CI++ + Y+   PL
Sbjct: 805 QGLTAFEVLMTVWCDNFVYFSNFKNISIICIAMTKIYSFDSPL 847


>SPAC144.10c |gwt1|mug59|pig-W|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 459

 Score = 27.9 bits (59), Expect = 2.6
 Identities = 10/24 (41%), Positives = 16/24 (66%)

Query: 282 LGIIMGAFILCWLPFFLFYVSTSL 305
           LG ++  FI C +P F+ YVS+ +
Sbjct: 50  LGFLVEFFIFCLIPLFVIYVSSKV 73


>SPCC965.13 |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 537

 Score = 27.5 bits (58), Expect = 3.5
 Identities = 16/65 (24%), Positives = 29/65 (44%)

Query: 39  MSVLLLIVITAVLGNMLVIVSVMRHRKLRVITNYFVVSLAFADILVAMVVMPFNFSVQFY 98
           + V+ ++  ++  G   V VS +   K  V+   FV+S AF  +    ++M       F 
Sbjct: 266 LPVINIMNYSSTTGEKTVQVSTLAKAKSAVVRTKFVLSTAFKLLCTEPIIMALGLYNGFA 325

Query: 99  QGWVF 103
            G +F
Sbjct: 326 YGLIF 330


>SPBC582.06c |mcp6|hrs1, mug3|meiosis specific coiled-coil protein
           Mcp6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 327

 Score = 27.1 bits (57), Expect = 4.6
 Identities = 14/48 (29%), Positives = 27/48 (56%)

Query: 224 EANRQEKALHARAGNAMLMHRHSRDVSDKNGALHINATTPTKDRNILK 271
           E++R ++   + +  + L+  HS D S+    L+IN ++P K + I K
Sbjct: 194 ESDRFKRNSQSLSQQSPLLDVHSPDNSNHRTMLNINNSSPIKPKKIFK 241


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.328    0.137    0.427 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,696,004
Number of Sequences: 5004
Number of extensions: 68394
Number of successful extensions: 211
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 207
Number of HSP's gapped (non-prelim): 7
length of query: 393
length of database: 2,362,478
effective HSP length: 74
effective length of query: 319
effective length of database: 1,992,182
effective search space: 635506058
effective search space used: 635506058
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.8 bits)
S2: 55 (26.2 bits)