GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002325-TA|BGIBMGA002325-PA|IPR000276|Rhodopsin-like GPCR
superfamily
         (393 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0211 + 15899017-15901392                                         31   1.2  
02_04_0346 - 22183145-22183264,22183877-22183966,22184140-221842...    30   2.8  
06_02_0060 - 11026885-11026929,11027732-11027756,11027886-110279...    29   6.5  
03_02_0927 - 12452262-12452428,12452538-12452607,12452689-124528...    29   6.5  
12_01_0510 + 4042321-4042411,4044653-4044723,4044985-4046106           29   8.5  
09_02_0048 - 3532663-3533475,3534086-3534589,3534715-3535740,353...    29   8.5  
02_05_0877 + 32403363-32404662,32406545-32406630,32406709-324070...    29   8.5  

>10_08_0211 + 15899017-15901392
          Length = 791

 Score = 31.5 bits (68), Expect = 1.2
 Identities = 14/39 (35%), Positives = 24/39 (61%)

Query: 39 MSVLLLIVITAVLGNMLVIVSVMRHRKLRVITNYFVVSL 77
          M +  L+V+TAVL  ++ I+ + RHR    +  YF++ L
Sbjct: 3  MRIEFLVVVTAVLFLLMSILDMFRHRSRHNLIKYFLLIL 41


>02_04_0346 -
           22183145-22183264,22183877-22183966,22184140-22184220,
           22184430-22184589,22184723-22184787,22185370-22185441,
           22186163-22186327
          Length = 250

 Score = 30.3 bits (65), Expect = 2.8
 Identities = 13/41 (31%), Positives = 24/41 (58%)

Query: 207 FWIPCTIMIFTYLAIFKEANRQEKALHARAGNAMLMHRHSR 247
           F +PC IM +    + ++  RQE+A+      A+++HR+ R
Sbjct: 190 FLLPCYIMAWAISIMQRQRQRQEEAMLLPTEVAIILHRNGR 230


>06_02_0060 -
           11026885-11026929,11027732-11027756,11027886-11027992,
           11028023-11028103,11028301-11028405,11031495-11031762,
           11031854-11032056
          Length = 277

 Score = 29.1 bits (62), Expect = 6.5
 Identities = 15/35 (42%), Positives = 20/35 (57%)

Query: 66  LRVITNYFVVSLAFADILVAMVVMPFNFSVQFYQG 100
           L + T  F V +AFA  L  MV+MP  F++ F  G
Sbjct: 98  LFLATGIFFVFIAFALFLPVMVIMPQKFAICFTLG 132


>03_02_0927 -
           12452262-12452428,12452538-12452607,12452689-12452830,
           12452937-12453117,12454068-12454203
          Length = 231

 Score = 29.1 bits (62), Expect = 6.5
 Identities = 14/58 (24%), Positives = 30/58 (51%)

Query: 13  ATVSATINGTAEEEYDVTQGVFFKLRMSVLLLIVITAVLGNMLVIVSVMRHRKLRVIT 70
           A+    +N      +D+T G  F+L   V+LL+ + +V+GN    +++     + ++T
Sbjct: 126 ASFRVKVNNMLMIAHDITLGKDFRLFFQVVLLLWLLSVIGNFCSSITLAYFGTIALVT 183


>12_01_0510 + 4042321-4042411,4044653-4044723,4044985-4046106
          Length = 427

 Score = 28.7 bits (61), Expect = 8.5
 Identities = 14/42 (33%), Positives = 20/42 (47%)

Query: 267 RNILKMKREHKAARTLGIIMGAFILCWLPFFLFYVSTSLCDT 308
           R IL + +  K   T+G ++ A  L  LP F     T LC +
Sbjct: 290 RRILSITKTRKLLNTIGFVVSAVALMALPLFRTPSGTVLCSS 331


>09_02_0048 - 3532663-3533475,3534086-3534589,3534715-3535740,
            3536083-3536226,3536974-3537375,3537499-3537721,
            3537830-3542368,3542480-3542599,3543005-3543038,
            3543922-3544102,3544198-3544815,3545022-3551098,
            3551139-3551304,3551508-3551614,3552056-3552178,
            3553417-3553642
          Length = 5100

 Score = 28.7 bits (61), Expect = 8.5
 Identities = 10/23 (43%), Positives = 14/23 (60%)

Query: 292  CWLPFFLFYVSTSLCDTCKCPDV 314
            C + F  +Y+ +  C TC CPDV
Sbjct: 3311 CLVEFDGYYLESEPCVTCSCPDV 3333


>02_05_0877 +
           32403363-32404662,32406545-32406630,32406709-32407077,
           32407174-32407257,32407362-32407784,32408368-32408434,
           32409238-32409430,32409577-32409680,32409787-32409990,
           32410174-32410427,32410511-32410735,32410812-32411033,
           32411109-32411162,32411337-32411402,32411496-32411633,
           32411979-32412032,32412334-32412393,32412975-32413340,
           32413415-32413582
          Length = 1478

 Score = 28.7 bits (61), Expect = 8.5
 Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 1/67 (1%)

Query: 251 DKNGALHINATTPTKDRNILKMKREHKAARTLGIIMGAFILCWLPFFLFYVSTSLCDTCK 310
           ++ G   +N    +K+R +L  +R +K  + LG+  G   L  LP      S S+CD C 
Sbjct: 232 EEEGESSLNWLLGSKERFVLTSERPNKKRKLLGVDAGLEQLVLLPRSGAEAS-SVCDVCC 290

Query: 311 CPDVVTV 317
             +  TV
Sbjct: 291 LGESSTV 297


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.328    0.137    0.427 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,073,169
Number of Sequences: 37544
Number of extensions: 379189
Number of successful extensions: 971
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 964
Number of HSP's gapped (non-prelim): 8
length of query: 393
length of database: 14,793,348
effective HSP length: 83
effective length of query: 310
effective length of database: 11,677,196
effective search space: 3619930760
effective search space used: 3619930760
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.8 bits)
S2: 61 (28.7 bits)