GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002324-TA|BGIBMGA002324-PA|IPR001734|Na+/solute
symporter
         (581 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC644.13c |||Rab GTPase binding |Schizosaccharomyces pombe|chr...    29   1.3  
SPAC16E8.13 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    29   2.3  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    28   3.1  
SPBC6B1.06c |ubp14|ucp2|ubiquitin C-terminal hydrolase Ubp14|Sch...    28   3.1  
SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor Cwf22|Schizosacch...    27   7.2  
SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyce...    27   9.5  
SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3 |Sch...    27   9.5  
SPAC2C4.17c |||MS ion channel protein 2|Schizosaccharomyces pomb...    27   9.5  

>SPAC644.13c |||Rab GTPase binding |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 225

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 31/132 (23%), Positives = 54/132 (40%), Gaps = 13/132 (9%)

Query: 172 IVFNLLGGLAAAIRADVIQTLTMILVSGAFIVQATVKAGGPATVFNGNLEGGRLKFFQ-- 229
           ++F+L+  LA A+  D I+  ++  V     V A +  G      N  L G  +  FQ  
Sbjct: 97  LIFSLVIALALALSTDKIERESVFTV-----VVALIWFGEAVCSLNIKLLGANISIFQSM 151

Query: 230 ----FTWDPTVRVDTLSAIIGQLFMSISIYGCQQ--TFVQRYCSMSSESRVKKTLLANVP 283
               ++  P +    + A +  +F+ I +       T       + + +   K LLA  P
Sbjct: 152 CILGYSSFPLMIASIVCAFVPLIFIRIPVIVAMYAWTLFAAMGVLQNSNLSNKKLLAVYP 211

Query: 284 AVSVLFSLSWIV 295
                FSL+WI+
Sbjct: 212 LFLFYFSLAWII 223


>SPAC16E8.13 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 547

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 15/47 (31%), Positives = 22/47 (46%)

Query: 520 PGRIRTLPIEKSNIEVKEDKESSEKTDQTVVDAKPTVFATTSSRLFE 566
           P     L I+K NI+   +   S  T+Q +V      FA+T+  L E
Sbjct: 158 PETCHVLHIDKVNIKYPMESSDSSSTEQQLVGPSSKPFASTTPALIE 204


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 2/50 (4%)

Query: 520  PGRIRTLPIEKSNIEVKE--DKESSEKTDQTVVDAKPTVFATTSSRLFEA 567
            P R RT PI +   + K   +K+ +EK+ Q  + A+PT   T  +  F A
Sbjct: 979  PSRPRTAPIPEPEEQKKAPVEKKDAEKSVQAPIPAQPTGNITIQNAYFTA 1028


>SPBC6B1.06c |ubp14|ucp2|ubiquitin C-terminal hydrolase
           Ubp14|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 775

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 12/37 (32%), Positives = 24/37 (64%), Gaps = 1/37 (2%)

Query: 505 EKLLHPLVAKLSRKLPGRIRTLPIEK-SNIEVKEDKE 540
           E+ LHP+V  ++R+   +I   P +K + +E++ED +
Sbjct: 62  EQTLHPIVVTIARQPKQKINDEPPQKITKLEIREDSD 98


>SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor
           Cwf22|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 834

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 16/41 (39%), Positives = 25/41 (60%), Gaps = 5/41 (12%)

Query: 529 EKSNIEVKEDKESSEKT-----DQTVVDAKPTVFATTSSRL 564
           E+ + E +ED+E SE+T     D++V D KP V   T++ L
Sbjct: 369 EEDDDENEEDEEDSEETSESEEDESVNDEKPQVIDQTNASL 409


>SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1297

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 12/33 (36%), Positives = 20/33 (60%)

Query: 232 WDPTVRVDTLSAIIGQLFMSISIYGCQQTFVQR 264
           W  T+ + +LS+   ++F SIS  G  QT++ R
Sbjct: 550 WSSTLNLSSLSSFDQEVFQSISKDGLLQTWMAR 582


>SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1133

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 13/48 (27%), Positives = 26/48 (54%)

Query: 272 SRVKKTLLANVPAVSVLFSLSWIVGMALYAVYKYCDPLATSKISAPDE 319
           ++ K T+ AN+ A ++  + + I+G+ L      CDP+  S ++   E
Sbjct: 784 TKAKSTVNANIVAGTLFRNYTTILGLLLRLRQACCDPVLLSNMTINSE 831


>SPAC2C4.17c |||MS ion channel protein 2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 840

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 15/47 (31%), Positives = 27/47 (57%), Gaps = 3/47 (6%)

Query: 112 VYEYLEMRFGSIWVRRIAA--ATFLLRQVLN-LAVTVYTPTVALHAV 155
           ++ +LE+ +G  WV R+ A    ++L  ++  L  T+Y  TV L A+
Sbjct: 104 IFVWLEVAWGGFWVSRVIARLLPYILYPLMGILPFTMYKYTVILTAL 150


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.324    0.135    0.416 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,049,332
Number of Sequences: 5004
Number of extensions: 69174
Number of successful extensions: 239
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 236
Number of HSP's gapped (non-prelim): 8
length of query: 581
length of database: 2,362,478
effective HSP length: 77
effective length of query: 504
effective length of database: 1,977,170
effective search space: 996493680
effective search space used: 996493680
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 56 (26.6 bits)