GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002324-TA|BGIBMGA002324-PA|IPR001734|Na+/solute
symporter
         (581 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0279 + 13824006-13825490                                         33   0.47 
04_04_0954 + 29631929-29632004,29632397-29633437,29634409-29635547     31   2.5  
07_01_0617 + 4573016-4573258                                           30   5.8  
07_03_0629 - 20076676-20080390,20080508-20080576,20081335-20081660     29   7.7  

>04_03_0279 + 13824006-13825490
          Length = 494

 Score = 33.5 bits (73), Expect = 0.47
 Identities = 25/61 (40%), Positives = 31/61 (50%), Gaps = 3/61 (4%)

Query: 131 ATFLLRQVLNLAVTVYTPTVALHAVLALPHWA--SAAALTVVSIVFNLLGGLAAAIRADV 188
           A   LR  L +++    P V L    A  HWA  SAAAL V ++ F L G + A I  DV
Sbjct: 97  AVSALRPGLEVSLAAARPRVGLLVADAFLHWAHASAAALGVPTVAF-LGGNMFATIMRDV 155

Query: 189 I 189
           I
Sbjct: 156 I 156


>04_04_0954 + 29631929-29632004,29632397-29633437,29634409-29635547
          Length = 751

 Score = 31.1 bits (67), Expect = 2.5
 Identities = 22/80 (27%), Positives = 39/80 (48%), Gaps = 1/80 (1%)

Query: 109 TNSVYEYLEMRFGSIWVRRIAAATFLLRQVLNLAVTVYTPTVALHAVLALPHWASAAALT 168
           TNS     +   G +     +AA  L+  ++ L       + A HAVL L  W++AAA +
Sbjct: 564 TNSSVPEGKFALGFVLALSASAAFALILSLMQLTFDTVLRSNAAHAVLELQLWSNAAA-S 622

Query: 169 VVSIVFNLLGGLAAAIRADV 188
            VS+    + G  +++ A++
Sbjct: 623 CVSVAGLFISGEWSSLTAEM 642


>07_01_0617 + 4573016-4573258
          Length = 80

 Score = 29.9 bits (64), Expect = 5.8
 Identities = 20/63 (31%), Positives = 35/63 (55%), Gaps = 3/63 (4%)

Query: 164 AAALTVVSIVFNLLGGLAAAIRADVIQTLTMILV--SGAFIVQATVKAGG-PATVFNGNL 220
           AA + V+ +VF + GG+AA    ++ +T  + +V  SG  +   T+++   P+   NGN 
Sbjct: 8   AAIVAVILLVFLVSGGMAARPMVNMEKTTAVPVVRKSGVVVESWTMESSSLPSGCTNGNG 67

Query: 221 EGG 223
            GG
Sbjct: 68  AGG 70


>07_03_0629 - 20076676-20080390,20080508-20080576,20081335-20081660
          Length = 1369

 Score = 29.5 bits (63), Expect = 7.7
 Identities = 15/44 (34%), Positives = 23/44 (52%)

Query: 494  LLTWKETDRYDEKLLHPLVAKLSRKLPGRIRTLPIEKSNIEVKE 537
            L +W++    + KLL P + KL      ++  LPIE  +  VKE
Sbjct: 1077 LFSWEQWSEAEYKLLIPHLRKLGINACSKLSLLPIETLSSSVKE 1120


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.324    0.135    0.416 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,741,495
Number of Sequences: 37544
Number of extensions: 475167
Number of successful extensions: 1348
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1347
Number of HSP's gapped (non-prelim): 4
length of query: 581
length of database: 14,793,348
effective HSP length: 86
effective length of query: 495
effective length of database: 11,564,564
effective search space: 5724459180
effective search space used: 5724459180
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 63 (29.5 bits)