GeneModel BLAST Result against uniref50

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002323-TA|BGIBMGA002323-PA|undefined
         (59 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q54ZC1 Cluster: Putative RNA polymerase III subunit; n=...    32   2.0  
UniRef50_Q55C81 Cluster: Putative uncharacterized protein; n=1; ...    31   4.5  
UniRef50_Q1N7P2 Cluster: Putative uncharacterized protein; n=1; ...    30   7.9  
UniRef50_Q1ZXN6 Cluster: Pleckstrin homology (PH) domain-contain...    30   7.9  
UniRef50_Q6BX36 Cluster: Debaryomyces hansenii chromosome B of s...    30   7.9  

>UniRef50_Q54ZC1 Cluster: Putative RNA polymerase III subunit; n=2;
           Dictyostelium discoideum|Rep: Putative RNA polymerase
           III subunit - Dictyostelium discoideum AX4
          Length = 430

 Score = 32.3 bits (70), Expect = 2.0
 Identities = 17/43 (39%), Positives = 20/43 (46%), Gaps = 1/43 (2%)

Query: 13  PTPLPVRHNYDTVLAPRGSFLYNSIVHRRNTNVEKAPTPPPKK 55
           P P P      TV  P GS    +I    NT +E  P PPPK+
Sbjct: 291 PPPKPTTIT-KTVTNPDGSITTTTIPINENTKIEDQPPPPPKE 332


>UniRef50_Q55C81 Cluster: Putative uncharacterized protein; n=1;
           Dictyostelium discoideum AX4|Rep: Putative
           uncharacterized protein - Dictyostelium discoideum AX4
          Length = 1359

 Score = 31.1 bits (67), Expect = 4.5
 Identities = 16/53 (30%), Positives = 27/53 (50%)

Query: 4   DNDSNNNADPTPLPVRHNYDTVLAPRGSFLYNSIVHRRNTNVEKAPTPPPKKR 56
           +N++NNN +       +N +       + + NS    R+T VEK P PPP+ +
Sbjct: 69  NNNNNNNNNNNNNNYNNNNNNNNNNNNNIITNSPPLSRSTGVEKPPPPPPETK 121


>UniRef50_Q1N7P2 Cluster: Putative uncharacterized protein; n=1;
           Sphingomonas sp. SKA58|Rep: Putative uncharacterized
           protein - Sphingomonas sp. SKA58
          Length = 699

 Score = 30.3 bits (65), Expect = 7.9
 Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 2/48 (4%)

Query: 12  DPTPLPVRHNYDTVLAPRGSFLYNSIVHRRNTNVEKAPTPPPKKRNAQ 59
           D  PLP+R + D  +A  G  L  S ++R +   ++ PTPP  + +AQ
Sbjct: 225 DGKPLPLRRDGDNWVA--GLTLDRSFLYRVDPAADRGPTPPLHRIDAQ 270


>UniRef50_Q1ZXN6 Cluster: Pleckstrin homology (PH) domain-containing
            protein; n=2; Dictyostelium discoideum|Rep: Pleckstrin
            homology (PH) domain-containing protein - Dictyostelium
            discoideum AX4
          Length = 1145

 Score = 30.3 bits (65), Expect = 7.9
 Identities = 17/54 (31%), Positives = 23/54 (42%)

Query: 4    DNDSNNNADPTPLPVRHNYDTVLAPRGSFLYNSIVHRRNTNVEKAPTPPPKKRN 57
            +N++N+N D T  P        L PRG    N  V+  N     +P P P   N
Sbjct: 1063 NNNNNSNTDFTTPPTGKPRVMPLPPRGGSAVNVAVNNNNNINNNSPVPFPPTTN 1116


>UniRef50_Q6BX36 Cluster: Debaryomyces hansenii chromosome B of
           strain CBS767 of Debaryomyces hansenii; n=1;
           Debaryomyces hansenii|Rep: Debaryomyces hansenii
           chromosome B of strain CBS767 of Debaryomyces hansenii -
           Debaryomyces hansenii (Yeast) (Torulaspora hansenii)
          Length = 668

 Score = 30.3 bits (65), Expect = 7.9
 Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 1/57 (1%)

Query: 2   ELDNDSNNNADPTPLPVRHNYDTVLAPRGSFLYNSIVHRRNTNVEKAPTPPP-KKRN 57
           +L  +++ N     L + +NY   L P  S   NS  +  N+     P PPP +KRN
Sbjct: 543 QLSTNNDTNYTTNHLGIMNNYSAPLPPPRSPPSNSPTNGTNSKRPVPPPPPPSRKRN 599


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.310    0.129    0.387 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 90,669,319
Number of Sequences: 1657284
Number of extensions: 3585670
Number of successful extensions: 5699
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 5696
Number of HSP's gapped (non-prelim): 5
length of query: 59
length of database: 575,637,011
effective HSP length: 39
effective length of query: 20
effective length of database: 511,002,935
effective search space: 10220058700
effective search space used: 10220058700
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 65 (30.3 bits)