Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002323-TA|BGIBMGA002323-PA|undefined
(59 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase |Schizosa... 25 0.90
SPBC4B4.04 |||translation initiation factor eIF2A |Schizosacchar... 25 0.90
SPBC16C6.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 25 1.2
SPAC22E12.11c |set3||histone lysine methyltransferase Set3|Schiz... 25 1.2
SPCC1442.13c |||RNA-binding protein, G-pathc type|Schizosaccharo... 25 1.6
SPBC2D10.11c |||nucleosome assembly protein Nap2 |Schizosaccharo... 24 2.8
SPCC1919.14c |bdp1||transcription factor TFIIIB complex subunit ... 23 4.8
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb... 23 6.4
SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces ... 23 6.4
SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces... 23 6.4
SPAC16A10.08c |mug74|SPAC589.01c|sequence orphan|Schizosaccharom... 23 6.4
SPCC126.04c |||SAGA complex subunit Sgf73 |Schizosaccharomyces p... 23 6.4
SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomy... 23 6.4
>SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1076
Score = 25.4 bits (53), Expect = 0.90
Identities = 12/34 (35%), Positives = 17/34 (50%)
Query: 25 VLAPRGSFLYNSIVHRRNTNVEKAPTPPPKKRNA 58
+L PR + + T V PTPPP+K +A
Sbjct: 1020 LLPPRSGSSSSGVPAPNLTPVNVPPTPPPRKSSA 1053
>SPBC4B4.04 |||translation initiation factor eIF2A
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 576
Score = 25.4 bits (53), Expect = 0.90
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 5 NDSNNNADPTPLPVRHNYDTVLAPRGSFL 33
ND+ + A T LP + Y+ +P G +L
Sbjct: 60 NDTESGAKLTQLPAANTYELGFSPLGKYL 88
>SPBC16C6.04 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 350
Score = 25.0 bits (52), Expect = 1.2
Identities = 14/51 (27%), Positives = 24/51 (47%)
Query: 6 DSNNNADPTPLPVRHNYDTVLAPRGSFLYNSIVHRRNTNVEKAPTPPPKKR 56
DS+N +P+ P + L F ++ + N+N ++ TP KKR
Sbjct: 247 DSSNTDNPSTKPSNEMPISPLLSSSVFFKDTEMSTPNSNHSRSRTPSSKKR 297
>SPAC22E12.11c |set3||histone lysine methyltransferase
Set3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 859
Score = 25.0 bits (52), Expect = 1.2
Identities = 10/28 (35%), Positives = 14/28 (50%)
Query: 28 PRGSFLYNSIVHRRNTNVEKAPTPPPKK 55
P + + S+V NT+ PT PKK
Sbjct: 786 PNSNLVQGSVVKPSNTSASALPTSAPKK 813
>SPCC1442.13c |||RNA-binding protein, G-pathc
type|Schizosaccharomyces pombe|chr 3|||Manual
Length = 207
Score = 24.6 bits (51), Expect = 1.6
Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 4/31 (12%)
Query: 25 VLAPRGSFLYNSIVHRRNTNVEKAPTPPPKK 55
++ GSF+ +S + NVE +P PPP+K
Sbjct: 3 IIVEDGSFITSS----QWENVEASPKPPPRK 29
>SPBC2D10.11c |||nucleosome assembly protein Nap2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 379
Score = 23.8 bits (49), Expect = 2.8
Identities = 12/35 (34%), Positives = 18/35 (51%)
Query: 1 MELDNDSNNNADPTPLPVRHNYDTVLAPRGSFLYN 35
+E + DSN+ L + Y L+P G FLY+
Sbjct: 212 LEFEFDSNDYFTNKILTKTYYYKDDLSPSGEFLYD 246
>SPCC1919.14c |bdp1||transcription factor TFIIIB complex subunit
Bdp1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 507
Score = 23.0 bits (47), Expect = 4.8
Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Query: 12 DPTPLPV-RHNYDTVLAPRGSFLYNSIVHRRNTNVEKAPTPPPKKRNA 58
D T L V RH D V A ++ + + RR T+ P+K NA
Sbjct: 323 DETSLEVDRHERDFVPAEEREYVEENSLSRRVTSATWGNRQKPEKWNA 370
>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 2685
Score = 22.6 bits (46), Expect = 6.4
Identities = 10/30 (33%), Positives = 15/30 (50%)
Query: 22 YDTVLAPRGSFLYNSIVHRRNTNVEKAPTP 51
Y +PR ++ ++ HRRN EK P
Sbjct: 1690 YPLAFSPRFTYYRHTKCHRRNEKNEKEIIP 1719
>SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 582
Score = 22.6 bits (46), Expect = 6.4
Identities = 10/41 (24%), Positives = 16/41 (39%)
Query: 13 PTPLPVRHNYDTVLAPRGSFLYNSIVHRRNTNVEKAPTPPP 53
P P + + + P + N + + N N E PT P
Sbjct: 229 PNPQEINYQWSHEYRPHTQYQNNLLRAQPNVNCENFPTTVP 269
>SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 967
Score = 22.6 bits (46), Expect = 6.4
Identities = 15/56 (26%), Positives = 25/56 (44%)
Query: 4 DNDSNNNADPTPLPVRHNYDTVLAPRGSFLYNSIVHRRNTNVEKAPTPPPKKRNAQ 59
+++ NNN + L+PR Y+S V R T++E P + N+Q
Sbjct: 34 ESEDNNNFTMHSESIGPKSLDSLSPRRLSNYSSAVDPRTTSLEDVPRLILTRSNSQ 89
>SPAC16A10.08c |mug74|SPAC589.01c|sequence
orphan|Schizosaccharomyces pombe|chr 1|||Manual
Length = 285
Score = 22.6 bits (46), Expect = 6.4
Identities = 9/19 (47%), Positives = 13/19 (68%)
Query: 14 TPLPVRHNYDTVLAPRGSF 32
TP V+ N T L+PRG++
Sbjct: 119 TPYIVKENNKTHLSPRGNY 137
>SPCC126.04c |||SAGA complex subunit Sgf73 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 344
Score = 22.6 bits (46), Expect = 6.4
Identities = 9/22 (40%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
Query: 39 HRRNT-NVEKAPTPPPKKRNAQ 59
H +N+ N +K P PPK+R +
Sbjct: 149 HEKNSVNGQKNPEMPPKRRKTE 170
>SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 478
Score = 22.6 bits (46), Expect = 6.4
Identities = 10/21 (47%), Positives = 12/21 (57%)
Query: 1 MELDNDSNNNADPTPLPVRHN 21
+ELDNDS NN L + N
Sbjct: 302 LELDNDSTNNFQKEGLDEQDN 322
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.310 0.129 0.387
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 373,907
Number of Sequences: 5004
Number of extensions: 14537
Number of successful extensions: 34
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 23
Number of HSP's gapped (non-prelim): 13
length of query: 59
length of database: 2,362,478
effective HSP length: 40
effective length of query: 19
effective length of database: 2,162,318
effective search space: 41084042
effective search space used: 41084042
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 45 (22.2 bits)
- SilkBase 1999-2023 -