Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002323-TA|BGIBMGA002323-PA|undefined
(59 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0329 - 14454840-14454862,14483886-14485630,14485843-14486648 28 1.1
04_01_0382 - 5076673-5077774,5078122-5078186 27 1.9
03_02_1029 - 13488535-13493037 27 1.9
05_01_0169 - 1170614-1172098 26 4.4
06_02_0237 + 13341469-13342259,13342839-13343223,13343314-133434... 25 5.9
07_01_0549 + 4082672-4082731,4083424-4083489,4083628-4083674,408... 25 7.7
06_01_0248 - 1871955-1872199,1872289-1872447,1873139-1873237,187... 25 7.7
02_01_0477 + 3431509-3431551,3432243-3432319,3432417-3432542,343... 25 7.7
01_06_1444 + 37403921-37403977,37404303-37404334,37404351-37404633 25 7.7
01_01_1064 + 8393519-8394475 25 7.7
01_01_0453 - 3361460-3361549,3361660-3361846,3362038-3362139,336... 25 7.7
>04_03_0329 - 14454840-14454862,14483886-14485630,14485843-14486648
Length = 857
Score = 27.9 bits (59), Expect = 1.1
Identities = 13/50 (26%), Positives = 21/50 (42%)
Query: 5 NDSNNNADPTPLPVRHNYDTVLAPRGSFLYNSIVHRRNTNVEKAPTPPPK 54
N N P P +LA + + + + H +N + AP PPP+
Sbjct: 304 NPQGNPPPPPPPDTNAILTQILAQQANMMNTFLHHLQNPPQQNAPPPPPQ 353
>04_01_0382 - 5076673-5077774,5078122-5078186
Length = 388
Score = 27.1 bits (57), Expect = 1.9
Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Query: 19 RHNYDTVLAPRGSFLYNSIVHRRNTNVEKAPTPPPKKR 56
R N D L R L S+ + N +K PTPPPK+R
Sbjct: 230 RMNGDIDLEDRAEELLVSLDPTK-VNPKKLPTPPPKRR 266
>03_02_1029 - 13488535-13493037
Length = 1500
Score = 27.1 bits (57), Expect = 1.9
Identities = 13/50 (26%), Positives = 21/50 (42%)
Query: 5 NDSNNNADPTPLPVRHNYDTVLAPRGSFLYNSIVHRRNTNVEKAPTPPPK 54
N N P P +LA + + + + H +N + AP PPP+
Sbjct: 22 NPQGNPPPPPPPDTNAILTQILAQQANMMNAFLHHLQNPPQQNAPPPPPQ 71
>05_01_0169 - 1170614-1172098
Length = 494
Score = 25.8 bits (54), Expect = 4.4
Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 11/62 (17%)
Query: 3 LDNDSNN--NADPTPLPVRHNYDTVL------APRGSFLYNSIVHRRNTNVE---KAPTP 51
+D+D++ N +PTP P+ H T + A + +++HR T AP P
Sbjct: 308 VDDDASELENFEPTPQPLSHQMSTKIGKLMSRAAQQMSRSPAVIHRDTTTTTTNGDAPPP 367
Query: 52 PP 53
PP
Sbjct: 368 PP 369
>06_02_0237 +
13341469-13342259,13342839-13343223,13343314-13343427,
13343517-13344011
Length = 594
Score = 25.4 bits (53), Expect = 5.9
Identities = 12/26 (46%), Positives = 17/26 (65%), Gaps = 3/26 (11%)
Query: 29 RGSFLYNSIVHRRNTNVEK---APTP 51
+ SF+ N+I+ +RNT V APTP
Sbjct: 484 KNSFIKNTIIPKRNTGVRATGGAPTP 509
>07_01_0549 +
4082672-4082731,4083424-4083489,4083628-4083674,
4083757-4083802,4083905-4083985,4084105-4084147,
4084258-4084307,4084392-4084473,4084538-4084587,
4084687-4084760,4084870-4084921,4085034-4085459,
4085816-4086403
Length = 554
Score = 25.0 bits (52), Expect = 7.7
Identities = 14/66 (21%), Positives = 31/66 (46%), Gaps = 8/66 (12%)
Query: 1 MELDNDSNNNADPTPLPVRHNYDTVLA-PRGSFL-------YNSIVHRRNTNVEKAPTPP 52
+++D + NN P+ +Y +L P L + ++H ++ V K+P P
Sbjct: 276 VKVDKVAANNGHPSSTGTAKDYQELLKQPMDELLGQLTEKVVDEVIHGNHSRVTKSPAPT 335
Query: 53 PKKRNA 58
P++ ++
Sbjct: 336 PRRASS 341
>06_01_0248 -
1871955-1872199,1872289-1872447,1873139-1873237,
1873420-1873589,1874420-1874868
Length = 373
Score = 25.0 bits (52), Expect = 7.7
Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 4/42 (9%)
Query: 3 LDNDSNNNADPTP-LPVRHN---YDTVLAPRGSFLYNSIVHR 40
L + S PTP P R Y +L P+G FLY+ ++R
Sbjct: 55 LSSSSQQRYAPTPNAPARAPPPAYAALLTPQGRFLYDLFLYR 96
>02_01_0477 +
3431509-3431551,3432243-3432319,3432417-3432542,
3432638-3432715,3432797-3432952,3433044-3433140,
3433595-3433817,3440445-3440760,3440895-3441390,
3441485-3441651
Length = 592
Score = 25.0 bits (52), Expect = 7.7
Identities = 14/52 (26%), Positives = 26/52 (50%), Gaps = 6/52 (11%)
Query: 2 ELDND--SNNNADPTPLPVRHNYDTVLAPRGS----FLYNSIVHRRNTNVEK 47
EL+N+ ++NN D + + H Y T+ R + + Y +H +N + K
Sbjct: 177 ELENNGTTSNNQDDEDIAITHTYRTISKKRNNEITRYTYKCNLHGKNEDNNK 228
>01_06_1444 +
37403921-37403977,37404303-37404334,37404351-37404633
Length = 123
Score = 25.0 bits (52), Expect = 7.7
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
Query: 11 ADPTPLPVRHNYDTVLAPRGSFLY---NSIVHRRNTNVEKAPTPPPKK 55
A+P L +R D LA + +FL ++H N N E A TP P +
Sbjct: 21 ANPEDLKLRREMDN-LAQKEAFLKFFAEQLLHYLNKNREVATTPIPNQ 67
>01_01_1064 + 8393519-8394475
Length = 318
Score = 25.0 bits (52), Expect = 7.7
Identities = 8/17 (47%), Positives = 14/17 (82%)
Query: 40 RRNTNVEKAPTPPPKKR 56
RR+T+ E++ PPP++R
Sbjct: 268 RRSTSSERSSAPPPRRR 284
>01_01_0453 -
3361460-3361549,3361660-3361846,3362038-3362139,
3362239-3362306,3362976-3363175,3363253-3363595,
3363837-3363893,3364011-3364727,3364805-3365007,
3365171-3365297
Length = 697
Score = 25.0 bits (52), Expect = 7.7
Identities = 14/39 (35%), Positives = 18/39 (46%), Gaps = 2/39 (5%)
Query: 2 ELDNDSNNNADPTPLP--VRHNYDTVLAPRGSFLYNSIV 38
E ND+ NA TP P VR + T P Y S++
Sbjct: 93 EQSNDAKTNAKTTPFPAQVRFSTRTECPPLPESKYKSVI 131
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.310 0.129 0.387
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,421,969
Number of Sequences: 37544
Number of extensions: 99208
Number of successful extensions: 164
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 158
Number of HSP's gapped (non-prelim): 13
length of query: 59
length of database: 14,793,348
effective HSP length: 39
effective length of query: 20
effective length of database: 13,329,132
effective search space: 266582640
effective search space used: 266582640
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 52 (25.0 bits)
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