GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002323-TA|BGIBMGA002323-PA|undefined
         (59 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_27386| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   1.3  
SB_24503| Best HMM Match : Transket_pyr (HMM E-Value=0)                27   1.7  
SB_44450| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   3.8  
SB_11603| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   3.8  
SB_7831| Best HMM Match : RNA_pol_Rpb1_7 (HMM E-Value=0)               26   3.8  
SB_50940| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   3.8  
SB_28550| Best HMM Match : Fer2_2 (HMM E-Value=2.49992e-42)            26   5.1  
SB_50351| Best HMM Match : I-set (HMM E-Value=0.00016)                 26   5.1  
SB_9655| Best HMM Match : VWA (HMM E-Value=0.00019)                    26   5.1  
SB_20722| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   6.7  
SB_42897| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   8.9  
SB_44477| Best HMM Match : IBR (HMM E-Value=0.00086)                   25   8.9  
SB_648| Best HMM Match : SHQ1 (HMM E-Value=2)                          25   8.9  

>SB_27386| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 501

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 14/37 (37%), Positives = 16/37 (43%)

Query: 18  VRHNYDTVLAPRGSFLYNSIVHRRNTNVEKAPTPPPK 54
           V  N  T+L  R S L+  I     T   K   PPPK
Sbjct: 257 VNENCATILRIRNSLLHMGIARVNQTKQSKPDKPPPK 293


>SB_24503| Best HMM Match : Transket_pyr (HMM E-Value=0)
          Length = 562

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 11/28 (39%), Positives = 18/28 (64%)

Query: 4   DNDSNNNADPTPLPVRHNYDTVLAPRGS 31
           D+D +++ D   LP+R+ Y T LA  G+
Sbjct: 208 DDDGDDDDDDVMLPIRNAYGTALAKLGT 235


>SB_44450| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 346

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 1/44 (2%)

Query: 2   ELDNDSNNNADPTPLPVRHNY-DTVLAPRGSFLYNSIVHRRNTN 44
           ELDN  +N+  P P PV H+  D       ++  N   H RN N
Sbjct: 86  ELDNQYDNDNHPPPPPVGHSLRDEYERDPLAWNPNHHAHHRNIN 129


>SB_11603| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 635

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 1/44 (2%)

Query: 2   ELDNDSNNNADPTPLPVRHNY-DTVLAPRGSFLYNSIVHRRNTN 44
           ELDN  +N+  P P PV H+  D       ++  N   H RN N
Sbjct: 291 ELDNQYDNDNPPPPPPVGHSLRDEYERDPLAWNPNHHAHHRNIN 334


>SB_7831| Best HMM Match : RNA_pol_Rpb1_7 (HMM E-Value=0)
          Length = 1467

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 14/48 (29%), Positives = 23/48 (47%)

Query: 8   NNNADPTPLPVRHNYDTVLAPRGSFLYNSIVHRRNTNVEKAPTPPPKK 55
           ++N  PTP P+  +   +L      L ++   R  T     PTPPP++
Sbjct: 597 HHNLRPTPPPLPLSIPLLLQATPPHLQSTAQPRPTTVPPLPPTPPPRQ 644


>SB_50940| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 531

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 1/44 (2%)

Query: 2   ELDNDSNNNADPTPLPVRHNY-DTVLAPRGSFLYNSIVHRRNTN 44
           ELDN  +N+  P P PV H+  D       ++  N   H RN N
Sbjct: 319 ELDNQYDNDNPPPPPPVGHSLRDEYERDPLAWNPNHHAHHRNIN 362


>SB_28550| Best HMM Match : Fer2_2 (HMM E-Value=2.49992e-42)
          Length = 1644

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 12/36 (33%), Positives = 16/36 (44%)

Query: 17  PVRHNYDTVLAPRGSFLYNSIVHRRNTNVEKAPTPP 52
           PVR+  D      GS    S++     NV K+P  P
Sbjct: 455 PVRNEVDGYFVVGGSVTLGSLIELSEANVSKSPVFP 490


>SB_50351| Best HMM Match : I-set (HMM E-Value=0.00016)
          Length = 419

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 3/56 (5%)

Query: 7   SNNNADPTPLPVRHNYDT--VLAPRGSFLYNS-IVHRRNTNVEKAPTPPPKKRNAQ 59
           S+  + PTP   + N  +     PR S   +  I  R  +N + +PTPPP++ + Q
Sbjct: 343 SDKQSPPTPSRGQSNKQSSPTPPPRQSDKQSPPIPSRGQSNKQSSPTPPPRQSDKQ 398


>SB_9655| Best HMM Match : VWA (HMM E-Value=0.00019)
          Length = 283

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 16/41 (39%), Positives = 19/41 (46%), Gaps = 3/41 (7%)

Query: 17  PVRHNYDTVLAPRG---SFLYNSIVHRRNTNVEKAPTPPPK 54
           PV     TV  PRG     +   +V  R    E APTPPP+
Sbjct: 86  PVETFTSTVDTPRGRDGQGVARPVVTGRRVASEHAPTPPPR 126


>SB_20722| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 285

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 1/47 (2%)

Query: 2   ELDNDSNNNADPTPLPVRHNYDTVLAPRGSFLYNSIVHRRNTNVEKA 48
           ELDN  +++  P P PV H    V   R    ++   H R+ N+  +
Sbjct: 221 ELDNQFDHDNPPPPPPVGHPLRAVY-KRDQLAWDPNDHARHRNINNS 266


>SB_42897| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 602

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 22/57 (38%), Positives = 26/57 (45%), Gaps = 10/57 (17%)

Query: 8  NNNADPTPLPVR--HNYDTVLAPRGSFLYNSI-------VHRRNTNVEKAP-TPPPK 54
          N  A P P+P R    +   LAP  S LYNS        V  + +NV   P T PPK
Sbjct: 27 NKAAGPDPVPSRIWKEFAFELAPVISHLYNSSMDEVFLPVALKESNVSPVPKTTPPK 83


>SB_44477| Best HMM Match : IBR (HMM E-Value=0.00086)
          Length = 627

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 5/40 (12%)

Query: 8  NNNADPTPLPVRHNYDTVLAPRGSFLYNSIVHRRNTNVEK 47
          +NN D  P+ V HN+    AP     +N    RR+T++E+
Sbjct: 15 SNNEDDRPVEVLHNFQG--APNA---WNDKALRRDTSIER 49


>SB_648| Best HMM Match : SHQ1 (HMM E-Value=2)
          Length = 327

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 2/31 (6%)

Query: 21  NYDTVLAPRGSFLYNSIVHRRNTNVEKAPTP 51
           ++DT+L      +YN IVH   TN E A +P
Sbjct: 146 SFDTLLGQ--GVIYNIIVHDPTTNKEAAYSP 174


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.310    0.129    0.387 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,810,931
Number of Sequences: 59808
Number of extensions: 116063
Number of successful extensions: 187
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 176
Number of HSP's gapped (non-prelim): 15
length of query: 59
length of database: 16,821,457
effective HSP length: 38
effective length of query: 21
effective length of database: 14,548,753
effective search space: 305523813
effective search space used: 305523813
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 52 (25.0 bits)