Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002323-TA|BGIBMGA002323-PA|undefined
(59 letters)
Database: human
224,733 sequences; 73,234,838 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U14969-1|AAA85657.1| 137|Homo sapiens ribosomal protein L28 pro... 28 4.0
CR457024-1|CAG33305.1| 137|Homo sapiens RPL28 protein. 28 4.0
BC011582-1|AAH11582.1| 137|Homo sapiens ribosomal protein L28 p... 28 4.0
BC010182-1|AAH10182.1| 137|Homo sapiens ribosomal protein L28 p... 28 4.0
BC010173-1|AAH10173.1| 137|Homo sapiens ribosomal protein L28 p... 28 4.0
BC008833-1|AAH08833.1| 425|Homo sapiens coiled-coil domain cont... 28 4.0
AK000298-1|BAA91065.1| 425|Homo sapiens protein ( Homo sapiens ... 28 4.0
AB209627-1|BAD92864.1| 95|Homo sapiens ribosomal protein L28 v... 28 4.0
BC032352-1|AAH32352.1| 299|Homo sapiens CD300a molecule protein. 28 5.3
AJ238323-1|CAB66145.1| 299|Homo sapiens NK inhibitory receptor ... 28 5.3
AJ224864-1|CAB55347.1| 299|Homo sapiens IRC1 protein. 28 5.3
AJ010103-1|CAB52293.1| 103|Homo sapiens IRC1b protein. 28 5.3
AJ010102-1|CAB52292.1| 186|Homo sapiens IRC1c protein. 28 5.3
AJ010101-1|CAB52291.1| 299|Homo sapiens IRC1a protein. 28 5.3
AF176991-1|AAF89957.1| 298|Homo sapiens CMRF35H protein. 28 5.3
AF020314-1|AAD01646.1| 301|Homo sapiens CMRF-35-H9 protein. 28 5.3
U00802-1|AAA16256.1| 649|Homo sapiens drebrin E2 protein. 27 9.3
D17530-1|BAA04480.1| 649|Homo sapiens drebrin E protein. 27 9.3
DQ227317-1|ABB51162.1| 603|Homo sapiens synphilin-1A protein. 27 9.3
BC094759-1|AAH94759.1| 603|Homo sapiens SNCAIP protein protein. 27 9.3
BC040552-1|AAH40552.1| 1016|Homo sapiens SNCAIP protein protein. 27 9.3
BC033743-1|AAH33743.1| 553|Homo sapiens SNCAIP protein protein. 27 9.3
BC007567-1|AAH07567.1| 649|Homo sapiens drebrin 1 protein. 27 9.3
BC007281-1|AAH07281.1| 649|Homo sapiens drebrin 1 protein. 27 9.3
BC000283-1|AAH00283.1| 649|Homo sapiens drebrin 1 protein. 27 9.3
AL110225-1|CAB53683.1| 651|Homo sapiens hypothetical protein pr... 27 9.3
AK001617-1|BAA91791.1| 597|Homo sapiens protein ( Homo sapiens ... 27 9.3
AF167306-1|AAG17478.1| 919|Homo sapiens synuclein alpha interac... 27 9.3
AF076929-1|AAD30362.1| 919|Homo sapiens synphilin 1 protein. 27 9.3
AB110789-1|BAD19018.1| 859|Homo sapiens synphilin-1b protein pr... 27 9.3
AB110788-1|BAD19017.1| 919|Homo sapiens synphilin-1a protein pr... 27 9.3
>U14969-1|AAA85657.1| 137|Homo sapiens ribosomal protein L28
protein.
Length = 137
Score = 28.3 bits (60), Expect = 4.0
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 26 LAPRGSFLYNSIVHRRNTNVEKA 48
L R SF YN ++HR+ VE A
Sbjct: 32 LKARNSFRYNGLIHRKTVGVEPA 54
>CR457024-1|CAG33305.1| 137|Homo sapiens RPL28 protein.
Length = 137
Score = 28.3 bits (60), Expect = 4.0
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 26 LAPRGSFLYNSIVHRRNTNVEKA 48
L R SF YN ++HR+ VE A
Sbjct: 32 LKARNSFRYNGLIHRKTVGVEPA 54
>BC011582-1|AAH11582.1| 137|Homo sapiens ribosomal protein L28
protein.
Length = 137
Score = 28.3 bits (60), Expect = 4.0
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 26 LAPRGSFLYNSIVHRRNTNVEKA 48
L R SF YN ++HR+ VE A
Sbjct: 32 LKARNSFRYNGLIHRKTVGVEPA 54
>BC010182-1|AAH10182.1| 137|Homo sapiens ribosomal protein L28
protein.
Length = 137
Score = 28.3 bits (60), Expect = 4.0
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 26 LAPRGSFLYNSIVHRRNTNVEKA 48
L R SF YN ++HR+ VE A
Sbjct: 32 LKARNSFRYNGLIHRKTVGVEPA 54
>BC010173-1|AAH10173.1| 137|Homo sapiens ribosomal protein L28
protein.
Length = 137
Score = 28.3 bits (60), Expect = 4.0
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 26 LAPRGSFLYNSIVHRRNTNVEKA 48
L R SF YN ++HR+ VE A
Sbjct: 32 LKARNSFRYNGLIHRKTVGVEPA 54
>BC008833-1|AAH08833.1| 425|Homo sapiens coiled-coil domain
containing 49 protein.
Length = 425
Score = 28.3 bits (60), Expect = 4.0
Identities = 12/25 (48%), Positives = 18/25 (72%)
Query: 27 APRGSFLYNSIVHRRNTNVEKAPTP 51
+PR S L+NS V+RR T ++P+P
Sbjct: 295 SPRPSKLHNSKVNRRETGQTRSPSP 319
>AK000298-1|BAA91065.1| 425|Homo sapiens protein ( Homo sapiens
cDNA FLJ20291 fis, clone HEP04788. ).
Length = 425
Score = 28.3 bits (60), Expect = 4.0
Identities = 12/25 (48%), Positives = 18/25 (72%)
Query: 27 APRGSFLYNSIVHRRNTNVEKAPTP 51
+PR S L+NS V+RR T ++P+P
Sbjct: 295 SPRPSKLHNSKVNRRETGQTRSPSP 319
>AB209627-1|BAD92864.1| 95|Homo sapiens ribosomal protein L28
variant protein.
Length = 95
Score = 28.3 bits (60), Expect = 4.0
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 26 LAPRGSFLYNSIVHRRNTNVEKA 48
L R SF YN ++HR+ VE A
Sbjct: 40 LKARNSFRYNGLIHRKTVGVEPA 62
>BC032352-1|AAH32352.1| 299|Homo sapiens CD300a molecule protein.
Length = 299
Score = 27.9 bits (59), Expect = 5.3
Identities = 15/37 (40%), Positives = 17/37 (45%)
Query: 15 PLPVRHNYDTVLAPRGSFLYNSIVHRRNTNVEKAPTP 51
P V Y TV +PR Y S+V NTN A P
Sbjct: 248 PREVEVEYSTVASPREELHYASVVFDSNTNRIAAQRP 284
>AJ238323-1|CAB66145.1| 299|Homo sapiens NK inhibitory receptor
protein.
Length = 299
Score = 27.9 bits (59), Expect = 5.3
Identities = 15/37 (40%), Positives = 17/37 (45%)
Query: 15 PLPVRHNYDTVLAPRGSFLYNSIVHRRNTNVEKAPTP 51
P V Y TV +PR Y S+V NTN A P
Sbjct: 248 PREVEVEYSTVASPREELHYASVVFDSNTNRIAAQRP 284
>AJ224864-1|CAB55347.1| 299|Homo sapiens IRC1 protein.
Length = 299
Score = 27.9 bits (59), Expect = 5.3
Identities = 15/37 (40%), Positives = 17/37 (45%)
Query: 15 PLPVRHNYDTVLAPRGSFLYNSIVHRRNTNVEKAPTP 51
P V Y TV +PR Y S+V NTN A P
Sbjct: 248 PREVEVEYSTVASPREELHYASVVFDSNTNRIAAQRP 284
>AJ010103-1|CAB52293.1| 103|Homo sapiens IRC1b protein.
Length = 103
Score = 27.9 bits (59), Expect = 5.3
Identities = 15/37 (40%), Positives = 17/37 (45%)
Query: 15 PLPVRHNYDTVLAPRGSFLYNSIVHRRNTNVEKAPTP 51
P V Y TV +PR Y S+V NTN A P
Sbjct: 52 PREVEVEYSTVASPREELHYASVVFDSNTNRIAAQRP 88
>AJ010102-1|CAB52292.1| 186|Homo sapiens IRC1c protein.
Length = 186
Score = 27.9 bits (59), Expect = 5.3
Identities = 15/37 (40%), Positives = 17/37 (45%)
Query: 15 PLPVRHNYDTVLAPRGSFLYNSIVHRRNTNVEKAPTP 51
P V Y TV +PR Y S+V NTN A P
Sbjct: 135 PREVEVEYSTVASPREELHYASVVFDSNTNRIAAQRP 171
>AJ010101-1|CAB52291.1| 299|Homo sapiens IRC1a protein.
Length = 299
Score = 27.9 bits (59), Expect = 5.3
Identities = 15/37 (40%), Positives = 17/37 (45%)
Query: 15 PLPVRHNYDTVLAPRGSFLYNSIVHRRNTNVEKAPTP 51
P V Y TV +PR Y S+V NTN A P
Sbjct: 248 PREVEVEYSTVASPREELHYASVVFDSNTNRIAAQRP 284
>AF176991-1|AAF89957.1| 298|Homo sapiens CMRF35H protein.
Length = 298
Score = 27.9 bits (59), Expect = 5.3
Identities = 15/37 (40%), Positives = 17/37 (45%)
Query: 15 PLPVRHNYDTVLAPRGSFLYNSIVHRRNTNVEKAPTP 51
P V Y TV +PR Y S+V NTN A P
Sbjct: 247 PREVEVEYSTVASPREELHYASVVFDSNTNRIAAQRP 283
>AF020314-1|AAD01646.1| 301|Homo sapiens CMRF-35-H9 protein.
Length = 301
Score = 27.9 bits (59), Expect = 5.3
Identities = 15/37 (40%), Positives = 17/37 (45%)
Query: 15 PLPVRHNYDTVLAPRGSFLYNSIVHRRNTNVEKAPTP 51
P V Y TV +PR Y S+V NTN A P
Sbjct: 250 PREVEVEYSTVASPREELHYASVVFDSNTNRIAAQRP 286
>U00802-1|AAA16256.1| 649|Homo sapiens drebrin E2 protein.
Length = 649
Score = 27.1 bits (57), Expect = 9.3
Identities = 15/56 (26%), Positives = 23/56 (41%), Gaps = 2/56 (3%)
Query: 6 DSNNNADPTPLPVRHNYD--TVLAPRGSFLYNSIVHRRNTNVEKAPTPPPKKRNAQ 59
DS+ PTP+P R D T P + ++ ++ P PPP + Q
Sbjct: 323 DSHRRMAPTPIPTRSPSDSSTASTPVAEQIERALDEVTSSQPPPLPPPPPPAQETQ 378
>D17530-1|BAA04480.1| 649|Homo sapiens drebrin E protein.
Length = 649
Score = 27.1 bits (57), Expect = 9.3
Identities = 15/56 (26%), Positives = 23/56 (41%), Gaps = 2/56 (3%)
Query: 6 DSNNNADPTPLPVRHNYD--TVLAPRGSFLYNSIVHRRNTNVEKAPTPPPKKRNAQ 59
DS+ PTP+P R D T P + ++ ++ P PPP + Q
Sbjct: 323 DSHRRMAPTPIPTRSPSDSSTASTPVAEQIERALDEVTSSQPPPLPPPPPPAQETQ 378
>DQ227317-1|ABB51162.1| 603|Homo sapiens synphilin-1A protein.
Length = 603
Score = 27.1 bits (57), Expect = 9.3
Identities = 11/18 (61%), Positives = 12/18 (66%)
Query: 2 ELDNDSNNNADPTPLPVR 19
E D DSNN+ DP PVR
Sbjct: 311 ESDTDSNNSEDPKTTPVR 328
>BC094759-1|AAH94759.1| 603|Homo sapiens SNCAIP protein protein.
Length = 603
Score = 27.1 bits (57), Expect = 9.3
Identities = 11/18 (61%), Positives = 12/18 (66%)
Query: 2 ELDNDSNNNADPTPLPVR 19
E D DSNN+ DP PVR
Sbjct: 311 ESDTDSNNSEDPKTTPVR 328
>BC040552-1|AAH40552.1| 1016|Homo sapiens SNCAIP protein protein.
Length = 1016
Score = 27.1 bits (57), Expect = 9.3
Identities = 11/18 (61%), Positives = 12/18 (66%)
Query: 2 ELDNDSNNNADPTPLPVR 19
E D DSNN+ DP PVR
Sbjct: 724 ESDTDSNNSEDPKTTPVR 741
>BC033743-1|AAH33743.1| 553|Homo sapiens SNCAIP protein protein.
Length = 553
Score = 27.1 bits (57), Expect = 9.3
Identities = 11/18 (61%), Positives = 12/18 (66%)
Query: 2 ELDNDSNNNADPTPLPVR 19
E D DSNN+ DP PVR
Sbjct: 311 ESDTDSNNSEDPKTTPVR 328
>BC007567-1|AAH07567.1| 649|Homo sapiens drebrin 1 protein.
Length = 649
Score = 27.1 bits (57), Expect = 9.3
Identities = 15/56 (26%), Positives = 23/56 (41%), Gaps = 2/56 (3%)
Query: 6 DSNNNADPTPLPVRHNYD--TVLAPRGSFLYNSIVHRRNTNVEKAPTPPPKKRNAQ 59
DS+ PTP+P R D T P + ++ ++ P PPP + Q
Sbjct: 323 DSHRRMAPTPIPTRSPSDSSTASTPVAEQIERALDEVTSSQPPPLPPPPPPAQETQ 378
>BC007281-1|AAH07281.1| 649|Homo sapiens drebrin 1 protein.
Length = 649
Score = 27.1 bits (57), Expect = 9.3
Identities = 15/56 (26%), Positives = 23/56 (41%), Gaps = 2/56 (3%)
Query: 6 DSNNNADPTPLPVRHNYD--TVLAPRGSFLYNSIVHRRNTNVEKAPTPPPKKRNAQ 59
DS+ PTP+P R D T P + ++ ++ P PPP + Q
Sbjct: 323 DSHRRMAPTPIPTRSPSDSSTASTPVAEQIERALDEVTSSQPPPLPPPPPPAQETQ 378
>BC000283-1|AAH00283.1| 649|Homo sapiens drebrin 1 protein.
Length = 649
Score = 27.1 bits (57), Expect = 9.3
Identities = 15/56 (26%), Positives = 23/56 (41%), Gaps = 2/56 (3%)
Query: 6 DSNNNADPTPLPVRHNYD--TVLAPRGSFLYNSIVHRRNTNVEKAPTPPPKKRNAQ 59
DS+ PTP+P R D T P + ++ ++ P PPP + Q
Sbjct: 323 DSHRRMAPTPIPTRSPSDSSTASTPVAEQIERALDEVTSSQPPPLPPPPPPAQETQ 378
>AL110225-1|CAB53683.1| 651|Homo sapiens hypothetical protein
protein.
Length = 651
Score = 27.1 bits (57), Expect = 9.3
Identities = 15/56 (26%), Positives = 23/56 (41%), Gaps = 2/56 (3%)
Query: 6 DSNNNADPTPLPVRHNYD--TVLAPRGSFLYNSIVHRRNTNVEKAPTPPPKKRNAQ 59
DS+ PTP+P R D T P + ++ ++ P PPP + Q
Sbjct: 325 DSHRRMAPTPIPTRSPSDSSTASTPVAEQIERALDEVTSSQPPPLPPPPPPAQETQ 380
>AK001617-1|BAA91791.1| 597|Homo sapiens protein ( Homo sapiens
cDNA FLJ10755 fis, clone NT2RP3004569, weakly similar to
ANKYRIN, BRAIN VARIANT 1. ).
Length = 597
Score = 27.1 bits (57), Expect = 9.3
Identities = 11/18 (61%), Positives = 12/18 (66%)
Query: 2 ELDNDSNNNADPTPLPVR 19
E D DSNN+ DP PVR
Sbjct: 305 ESDTDSNNSEDPKTTPVR 322
>AF167306-1|AAG17478.1| 919|Homo sapiens synuclein alpha
interacting protein protein.
Length = 919
Score = 27.1 bits (57), Expect = 9.3
Identities = 11/18 (61%), Positives = 12/18 (66%)
Query: 2 ELDNDSNNNADPTPLPVR 19
E D DSNN+ DP PVR
Sbjct: 677 ESDTDSNNSEDPKTTPVR 694
>AF076929-1|AAD30362.1| 919|Homo sapiens synphilin 1 protein.
Length = 919
Score = 27.1 bits (57), Expect = 9.3
Identities = 11/18 (61%), Positives = 12/18 (66%)
Query: 2 ELDNDSNNNADPTPLPVR 19
E D DSNN+ DP PVR
Sbjct: 677 ESDTDSNNSEDPKTTPVR 694
>AB110789-1|BAD19018.1| 859|Homo sapiens synphilin-1b protein
protein.
Length = 859
Score = 27.1 bits (57), Expect = 9.3
Identities = 11/18 (61%), Positives = 12/18 (66%)
Query: 2 ELDNDSNNNADPTPLPVR 19
E D DSNN+ DP PVR
Sbjct: 617 ESDTDSNNSEDPKTTPVR 634
>AB110788-1|BAD19017.1| 919|Homo sapiens synphilin-1a protein
protein.
Length = 919
Score = 27.1 bits (57), Expect = 9.3
Identities = 11/18 (61%), Positives = 12/18 (66%)
Query: 2 ELDNDSNNNADPTPLPVR 19
E D DSNN+ DP PVR
Sbjct: 677 ESDTDSNNSEDPKTTPVR 694
Database: human
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 73,234,838
Number of sequences in database: 224,733
Lambda K H
0.310 0.129 0.387
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,023,991
Number of Sequences: 224733
Number of extensions: 478052
Number of successful extensions: 648
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 623
Number of HSP's gapped (non-prelim): 31
length of query: 59
length of database: 73,234,838
effective HSP length: 39
effective length of query: 20
effective length of database: 64,470,251
effective search space: 1289405020
effective search space used: 1289405020
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 57 (27.1 bits)
- SilkBase 1999-2023 -