Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002323-TA|BGIBMGA002323-PA|undefined
(59 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL117204-39|CAL49444.1| 982|Caenorhabditis elegans Hypothetical... 29 0.51
AL117204-32|CAB55122.2| 727|Caenorhabditis elegans Hypothetical... 29 0.51
Z30662-1|CAA83137.1| 344|Caenorhabditis elegans Hypothetical pr... 27 1.2
AF036698-2|AAB88353.1| 485|Caenorhabditis elegans Puf (pumilio/... 27 1.2
Z82078-6|CAB04946.1| 257|Caenorhabditis elegans Hypothetical pr... 25 4.8
AC024794-5|AAK68500.1| 320|Caenorhabditis elegans Hypothetical ... 25 4.8
U61948-1|AAB03144.2| 1432|Caenorhabditis elegans Hypothetical pr... 25 8.4
AC025726-36|AAL27268.1| 487|Caenorhabditis elegans Hypothetical... 25 8.4
AC025726-35|AAL27267.1| 489|Caenorhabditis elegans Hypothetical... 25 8.4
AC024772-3|AAF60538.1| 2344|Caenorhabditis elegans Hypothetical ... 25 8.4
>AL117204-39|CAL49444.1| 982|Caenorhabditis elegans Hypothetical
protein Y116A8C.16c protein.
Length = 982
Score = 28.7 bits (61), Expect = 0.51
Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
Query: 1 MELDNDSNNNADPTPLPVRHNYDTVLAPRGS 31
++ +D+NNN DP+P V +T L PRGS
Sbjct: 844 LDFGDDNNNNRDPSPNTVP---NTPLMPRGS 871
>AL117204-32|CAB55122.2| 727|Caenorhabditis elegans Hypothetical
protein Y116A8C.16a protein.
Length = 727
Score = 28.7 bits (61), Expect = 0.51
Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
Query: 1 MELDNDSNNNADPTPLPVRHNYDTVLAPRGS 31
++ +D+NNN DP+P V +T L PRGS
Sbjct: 589 LDFGDDNNNNRDPSPNTVP---NTPLMPRGS 616
>Z30662-1|CAA83137.1| 344|Caenorhabditis elegans Hypothetical
protein T16H12.1 protein.
Length = 344
Score = 27.5 bits (58), Expect = 1.2
Identities = 16/52 (30%), Positives = 20/52 (38%)
Query: 1 MELDNDSNNNADPTPLPVRHNYDTVLAPRGSFLYNSIVHRRNTNVEKAPTPP 52
M+ + D N L N T +A R N VH TN + P PP
Sbjct: 21 MDQNQDLLKNRKKANLDKNRNIATKVANRFELSLNQPVHFSQTNPKSTPEPP 72
>AF036698-2|AAB88353.1| 485|Caenorhabditis elegans Puf
(pumilio/fbf) domain-containingprotein 7 protein.
Length = 485
Score = 27.5 bits (58), Expect = 1.2
Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 4/38 (10%)
Query: 3 LDNDSNNNADPTP----LPVRHNYDTVLAPRGSFLYNS 36
L N ++ N +P P LP RH +T + S+++NS
Sbjct: 27 LSNKTHKNKNPKPPVKLLPYRHGSNTTSSDSDSYIFNS 64
>Z82078-6|CAB04946.1| 257|Caenorhabditis elegans Hypothetical
protein W09D6.5 protein.
Length = 257
Score = 25.4 bits (53), Expect = 4.8
Identities = 14/34 (41%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 23 DTVL-APRGSFLYNSIVHRRNTNVEKAPTPPPKK 55
DTV+ AP S S R T K +PPP+K
Sbjct: 62 DTVISAPPSSLKEKSPQSNRQTKSNKKSSPPPRK 95
>AC024794-5|AAK68500.1| 320|Caenorhabditis elegans Hypothetical
protein Y48G1BM.8 protein.
Length = 320
Score = 25.4 bits (53), Expect = 4.8
Identities = 17/55 (30%), Positives = 24/55 (43%), Gaps = 9/55 (16%)
Query: 3 LDNDSNNNADPTP----LPVRHNYDTVLAPRGSFLYNSIVHRRNTNVEKAPTPPP 53
L ++ N +P P LP RH +T + SF+ NS + TPPP
Sbjct: 27 LSKKTHKNKNPKPPVKLLPYRHGSNTTSSDSDSFILNS-----GSGSSDDETPPP 76
>U61948-1|AAB03144.2| 1432|Caenorhabditis elegans Hypothetical
protein C46A5.4 protein.
Length = 1432
Score = 24.6 bits (51), Expect = 8.4
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 14 TPLPVRH-NYDTVLAPRGSFLYNSIVHRRNTNVEK 47
TP P H ++AP SF+Y+ IVH + + K
Sbjct: 134 TPSPSGHATCSLLIAPFLSFIYDDIVHVPSNRIFK 168
>AC025726-36|AAL27268.1| 487|Caenorhabditis elegans Hypothetical
protein Y71G12B.1b protein.
Length = 487
Score = 24.6 bits (51), Expect = 8.4
Identities = 15/56 (26%), Positives = 26/56 (46%), Gaps = 3/56 (5%)
Query: 3 LDNDSNNNADPTPLPVRHNYDT--VLAPRGSFLYNSIVHRRNTNVEKAPTPPPKKR 56
++ + D P+R +T V P+ + + ++ N E +PTPP KKR
Sbjct: 425 IEKEKEKEEDAAKSPMRKPSETPKVSTPKAAGTPLTKFFKKENNTE-SPTPPVKKR 479
>AC025726-35|AAL27267.1| 489|Caenorhabditis elegans Hypothetical
protein Y71G12B.1a protein.
Length = 489
Score = 24.6 bits (51), Expect = 8.4
Identities = 15/56 (26%), Positives = 26/56 (46%), Gaps = 3/56 (5%)
Query: 3 LDNDSNNNADPTPLPVRHNYDT--VLAPRGSFLYNSIVHRRNTNVEKAPTPPPKKR 56
++ + D P+R +T V P+ + + ++ N E +PTPP KKR
Sbjct: 427 IEKEKEKEEDAAKSPMRKPSETPKVSTPKAAGTPLTKFFKKENNTE-SPTPPVKKR 481
>AC024772-3|AAF60538.1| 2344|Caenorhabditis elegans Hypothetical
protein Y40C5A.3 protein.
Length = 2344
Score = 24.6 bits (51), Expect = 8.4
Identities = 12/54 (22%), Positives = 23/54 (42%)
Query: 4 DNDSNNNADPTPLPVRHNYDTVLAPRGSFLYNSIVHRRNTNVEKAPTPPPKKRN 57
+N+ + NA P + +T + P S + + K P PPP++ +
Sbjct: 705 NNEMDGNAHNQPSEFSNLSETSITPASSHFGHDGKKQEKLPGSKGPIPPPRQES 758
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.310 0.129 0.387
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,081,637
Number of Sequences: 27539
Number of extensions: 83336
Number of successful extensions: 178
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 176
Number of HSP's gapped (non-prelim): 10
length of query: 59
length of database: 12,573,161
effective HSP length: 40
effective length of query: 19
effective length of database: 11,471,601
effective search space: 217960419
effective search space used: 217960419
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 51 (24.6 bits)
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