GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002322-TA|BGIBMGA002322-PA|undefined
         (754 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H1.01c |orp3|orc3, SPAP14E8.06c|origin recognition complex ...    36   0.016
SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyc...    29   2.4  

>SPAC3H1.01c |orp3|orc3, SPAP14E8.06c|origin recognition complex
           subunit Orp3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 690

 Score = 36.3 bits (80), Expect = 0.016
 Identities = 27/102 (26%), Positives = 47/102 (46%), Gaps = 6/102 (5%)

Query: 547 LNKNEFARRWLERTELEISDKLPGILRWFPVVKQRTYWVSPIEVAVESLRQTNRTLKSVA 606
           LN+N F      +  LEI  +L  ++R        T ++ P+EV +++   T  T K V 
Sbjct: 432 LNENIFTGNQTMKC-LEIHQELSELIR-----NSSTNYLEPVEVRMQNYSGTKHTRKVVE 485

Query: 607 FEARNPDTPLNPLTMRLLGILDSAVQGGIVNYENSFLTPAYE 648
                     + +  +++G+LD  VQ G +  E+  + P YE
Sbjct: 486 SGFDKSIIDFSKILKKIVGLLDEEVQYGCLGTESIDMYPFYE 527


>SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 781

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 23/82 (28%), Positives = 42/82 (51%), Gaps = 5/82 (6%)

Query: 424 KGFPEILRKPLGCLSTIPSQGFIYRGNEYEQL--QEFIERMLDEWPDAEVLPRLDPPGED 481
           K F  ++++ L  L+ I SQG  +R  + E +   E+    + ++   +VL     PG+D
Sbjct: 559 KDFECMIKQILRGLNYIHSQGIAHRDIKPENILISEYGVLRITDFGACDVLCN---PGDD 615

Query: 482 ITESEGQYLQINAVDPIMSDKL 503
           IT  E + + I   DP M+ ++
Sbjct: 616 ITAVESKSMGIFGSDPYMAPEI 637


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.320    0.136    0.405 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,410,449
Number of Sequences: 5004
Number of extensions: 145107
Number of successful extensions: 385
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 384
Number of HSP's gapped (non-prelim): 2
length of query: 754
length of database: 2,362,478
effective HSP length: 78
effective length of query: 676
effective length of database: 1,972,166
effective search space: 1333184216
effective search space used: 1333184216
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 57 (27.1 bits)