Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002322-TA|BGIBMGA002322-PA|undefined
(754 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0870 + 11964135-11964224,11965013-11965175,11965262-119653... 83 8e-16
02_05_0310 + 27769988-27770830 33 0.84
01_06_1667 + 38994627-38995718 33 0.84
01_06_0336 + 28533251-28533350,28533548-28533641,28533760-285339... 31 4.5
01_01_0911 - 7176355-7176372,7176502-7176756,7177352-7177615,717... 31 4.5
12_02_0586 + 20831933-20832378,20832434-20833031,20833813-208339... 30 5.9
05_05_0320 + 24085600-24086458,24087025-24087171,24087265-240873... 30 5.9
05_01_0288 + 2253005-2253137,2253269-2253398,2253504-2254524 30 5.9
01_06_0808 + 32134765-32136570 30 7.8
>03_02_0870 + 11964135-11964224,11965013-11965175,11965262-11965380,
11965971-11966083,11966179-11966234,11966320-11966417,
11966588-11966725,11966820-11967125,11967208-11967471,
11967587-11967754,11967838-11968056,11968115-11968158,
11968761-11968830,11968949-11969110,11969672-11969779,
11969873-11969910,11970121-11970265,11970800-11970926,
11971037-11971230,11971529-11971659,11972014-11972089,
11972218-11972328,11972465-11972647,11973264-11973407,
11973946-11973969,11974555-11974728,11974808-11975155,
11975232-11975561,11975776-11975961,11976052-11977026,
11977145-11977399
Length = 1852
Score = 83.0 bits (196), Expect = 8e-16
Identities = 83/359 (23%), Positives = 149/359 (41%), Gaps = 30/359 (8%)
Query: 355 YFEIA-ELLKRGGLWELAVDIVKELVSVYEEEALGYGPLAELHSQLAEFYASMLQSRRS- 412
Y ++A +L + L+ I + ++ VY+ YG LA+ H+ L + Y S+L+ S
Sbjct: 1497 YLQLANKLFAQAELYHFCASIQELIIPVYKSRR-AYGHLAKCHTSLKDIYESILEQEASP 1555
Query: 413 ----HPGYFRVIYHGKGFPEILRKPLGCLSTIPSQGFIYRGNEYEQLQEFIERMLDEWPD 468
Y+RV ++G+ F ++ +K + G+ E+L E +D
Sbjct: 1556 IPFIDATYYRVGFYGERFGKLNKKEY----VFREPRDVRLGDIMEKLSHIYEAKMDGNHT 1611
Query: 469 AEVLPRLDPPGEDITESEGQYLQINAVDPIMSDKLKRLSGKPVAEQILQYYKHNDVDKFY 528
++P D + YLQI AVDP+M D+ + + + D+F
Sbjct: 1612 LHIIPDSRQVNADELQPGVCYLQITAVDPVMEDEDLGSRRERIFSLSTGTVRARVFDRFL 1671
Query: 529 FSRPFDRPEESLSDSTEDLNKNEFARRWLERTELEISDKLPGILRWFPVVKQRTYWVSPI 588
F PF + ++ ED +W RT L+ P ++ V+K + SP+
Sbjct: 1672 FDTPFTKNGKT-QGGLED--------QWKRRTVLQTEGSFPALVNRLLVIKSESLEFSPV 1722
Query: 589 EVAVESLRQTNRTLKSVAFEARNPDTPLNPLTMRLLGILDSA----VQGGIVNYENSFLT 644
E A+ + L++ E R+ + P L IL + V G+++ +FL+
Sbjct: 1723 ENAIGMIETRTAALRNELEEPRSSEGDQLPRLQSLQRILQGSVAVQVNSGVLSVCTAFLS 1782
Query: 645 --PAYESRHPEHAALLVELKDLIADQIPLLKFGLDVHASRAPPAQEEMHAHLMERFRTV 701
PA R E L+ L + +A + K + VH +E H L+ F+++
Sbjct: 1783 GEPATRLRSQELQQLIAALLEFMA----VCKRAIRVHFRLIGEEDQEFHTQLVNGFQSL 1837
>02_05_0310 + 27769988-27770830
Length = 280
Score = 33.1 bits (72), Expect = 0.84
Identities = 32/138 (23%), Positives = 53/138 (38%), Gaps = 2/138 (1%)
Query: 17 LEVENAGGSGSLVDDALGLIVMLVQRPVFRPHWADMLHLQHYVMLHALRLLSTTIQDRST 76
+E ++ GG G + GL+ L + W H QH+ H+ S
Sbjct: 77 VEFDHDGGGGCGPESFSGLLRELSELEQSVASWGRKSHHQHHDKKHSPAPSSPLPPQEDR 136
Query: 77 RRRHGVTGQSPRTMQGLVQCRGGLGTSAPLQLETLTAARKQRVKQLYGDIRRGLAQCLSD 136
+ ++G G + G + GG G + L+ A KQ L GD R+ + Q + +
Sbjct: 137 KEKNGGNGDA-TDKPGDCRDGGGGGDGVGVALDGSVAVVKQSDDPL-GDFRQSMLQMIVE 194
Query: 137 MWYSLGEHKRSFIPCLVT 154
GE R + +T
Sbjct: 195 NGIVAGEDLREMLRRFLT 212
>01_06_1667 + 38994627-38995718
Length = 363
Score = 33.1 bits (72), Expect = 0.84
Identities = 34/112 (30%), Positives = 50/112 (44%), Gaps = 7/112 (6%)
Query: 401 EFYASMLQSRRSHPGYFRVIYHG--KGF--PEILRKPLGCLSTIPSQGFIYRGNEYEQL- 455
E +A + ++R HP RV YH +G+ E K L CL + G +EY +L
Sbjct: 251 EAHALLRDAKRIHPRLSRVTYHTLIRGYCKMEEFEKALECLKEMKEDGMEPNMDEYNKLI 310
Query: 456 QEFIERMLDEWPDAEVLPRLDPPGEDITESEGQYLQINAVDPIMSDKLKRLS 507
Q + LD W AE L + G + + L I AV + D+L + S
Sbjct: 311 QSLCLKALD-WRTAENLLKEMEDGGLCLKGTTRSL-IAAVKELEMDELSKAS 360
>01_06_0336 +
28533251-28533350,28533548-28533641,28533760-28533901,
28534107-28534212,28534345-28534511
Length = 202
Score = 30.7 bits (66), Expect = 4.5
Identities = 17/59 (28%), Positives = 32/59 (54%), Gaps = 7/59 (11%)
Query: 151 CLVTPFLEVSFLRDDEVRNTTIPIFFDMMQTEYNHSVAGGEKE--NYLKELESELIDKL 207
C +T L + FL T+P+ + +TE +H VA G + + K+++S L++K+
Sbjct: 139 CSLTSLLYIGFLCAH-----TLPVLYQRYKTEVDHLVAKGSDDIKKFYKKVDSNLLNKI 192
>01_01_0911 - 7176355-7176372,7176502-7176756,7177352-7177615,
7177691-7177810,7177910-7178041,7178136-7178252,
7178335-7178459,7178611-7178920,7179368-7179550,
7179643-7179787,7180126-7181355,7181454-7181563,
7181768-7182037,7182130-7182963
Length = 1370
Score = 30.7 bits (66), Expect = 4.5
Identities = 35/129 (27%), Positives = 55/129 (42%), Gaps = 8/129 (6%)
Query: 282 FYQEIERPHMYIRYVHKLASMYRAAQQWTEAGLTLRLHAKLLSWSHDPLPPRLRHPTLNH 341
F + E H Y+ + R ++ +GL + KLLS + H LNH
Sbjct: 1023 FMNDREGMHEITTYIKDVLRTLRELKK--SSGLAFEM-LKLLSDGQESSIDMWNHKELNH 1079
Query: 342 DDHTTHRELKEHLYFE--IAELLKRGGL--WELAVDIVKELVSVYEEEALGYGPLAELHS 397
D +++ E+ YF+ I G L WE + +I++ LV +E LA LHS
Sbjct: 1080 ADCSSNGEVTSIAYFKGYIFSGHSDGTLKVWEGSENILR-LVHESQEHTKAITSLAVLHS 1138
Query: 398 QLAEFYASM 406
+ F S+
Sbjct: 1139 EEKLFSGSL 1147
>12_02_0586 +
20831933-20832378,20832434-20833031,20833813-20833986,
20834208-20834570
Length = 526
Score = 30.3 bits (65), Expect = 5.9
Identities = 26/84 (30%), Positives = 31/84 (36%)
Query: 332 PRLRHPTLNHDDHTTHRELKEHLYFEIAELLKRGGLWELAVDIVKELVSVYEEEALGYGP 391
PRLR L+H L E L G W L VD EE L +GP
Sbjct: 210 PRLRRLRLSHVGGLPTLRLDAAATLEELHLRHLTGTWCLQVDAPGLRSFAVEETRLYFGP 269
Query: 392 LAELHSQLAEFYASMLQSRRSHPG 415
E +++A L R S PG
Sbjct: 270 EPEATTRIAAPRLDALTYRYSDPG 293
>05_05_0320 +
24085600-24086458,24087025-24087171,24087265-24087395,
24087536-24087746,24087834-24088071,24088757-24088931
Length = 586
Score = 30.3 bits (65), Expect = 5.9
Identities = 15/37 (40%), Positives = 18/37 (48%)
Query: 64 LRLLSTTIQDRSTRRRHGVTGQSPRTMQGLVQCRGGL 100
L LS S+ TG +P T GL QCRGG+
Sbjct: 65 LSSLSAAAAASSSGFAENATGAAPDTAYGLAQCRGGI 101
>05_01_0288 + 2253005-2253137,2253269-2253398,2253504-2254524
Length = 427
Score = 30.3 bits (65), Expect = 5.9
Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 6/69 (8%)
Query: 604 SVAFEARNPDTPLNPLTMRLLGILDSAVQGGIVNYENSFLTPAYESRHPEHAAL---LVE 660
+V+ E + + +NP + LG L + ++S L P Y+ HPE A+L V
Sbjct: 140 TVSTERTSGSSDVNPSSAGALGNLSHLLSE---TAQSSMLLPVYDKNHPETASLPRPKVP 196
Query: 661 LKDLIADQI 669
K+L DQ+
Sbjct: 197 PKELFLDQL 205
>01_06_0808 + 32134765-32136570
Length = 601
Score = 29.9 bits (64), Expect = 7.8
Identities = 16/59 (27%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 345 TTHRELKEHLYFEIAELLKRGGLWELAVDIVKELVSVYEEEALGYGPLAELHSQLAEFY 403
T+ + L H++ E++E +E+++ V +L++ YE A+G P E +L + Y
Sbjct: 243 TSEKRLSNHVFGELSESTADLCFYEISLSSVMQLLTFYESVAIG-PPKPEKLFRLLDMY 300
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.320 0.136 0.405
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,332,261
Number of Sequences: 37544
Number of extensions: 949742
Number of successful extensions: 2189
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 2182
Number of HSP's gapped (non-prelim): 11
length of query: 754
length of database: 14,793,348
effective HSP length: 88
effective length of query: 666
effective length of database: 11,489,476
effective search space: 7651991016
effective search space used: 7651991016
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 64 (29.9 bits)
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