GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002322-TA|BGIBMGA002322-PA|undefined
         (754 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    27   0.74 
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    23   9.2  

>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 26.6 bits (56), Expect = 0.74
 Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 4/59 (6%)

Query: 82  VTGQSPRTMQGLVQC-RGGLGTS---APLQLETLTAARKQRVKQLYGDIRRGLAQCLSD 136
           +T +SP+  QGL+QC      T+   A   + T T AR+Q+ +Q     ++   Q  SD
Sbjct: 757 ITARSPQGSQGLLQCATSNYSTTRWPATSVITTTTGARQQQQQQQQQQQQQQQQQSSSD 815


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 23.0 bits (47), Expect = 9.2
 Identities = 7/23 (30%), Positives = 16/23 (69%)

Query: 332 PRLRHPTLNHDDHTTHRELKEHL 354
           P+ ++   N++ +T+H+ L+ HL
Sbjct: 111 PKNQYKNQNNNHYTSHQHLRTHL 133


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.320    0.136    0.405 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 214,113
Number of Sequences: 429
Number of extensions: 9247
Number of successful extensions: 19
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 17
Number of HSP's gapped (non-prelim): 2
length of query: 754
length of database: 140,377
effective HSP length: 63
effective length of query: 691
effective length of database: 113,350
effective search space: 78324850
effective search space used: 78324850
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 47 (23.0 bits)