GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002321-TA|BGIBMGA002321-PA|undefined
         (767 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1322.06 |kap113||karyopherin Kap113|Schizosaccharomyces pomb...    31   0.45 
SPBC119.14 |rti1||Rad22 homolog Rti1|Schizosaccharomyces pombe|c...    28   4.2  
SPAPJ698.03c |prp12|sap130|U2 snRNP-associated protein Sap130 |S...    28   5.6  
SPAC4G9.13c |vps26|pep8|retromer complex subunit Vps26|Schizosac...    28   5.6  
SPAC3F10.04 |gsa1|gsh2|glutathione synthetase large subunit Gsa1...    27   9.8  

>SPCC1322.06 |kap113||karyopherin Kap113|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 983

 Score = 31.5 bits (68), Expect = 0.45
 Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 5/53 (9%)

Query: 487 ALTQLLHVPSEELVKFLQDILDTLFSILTQVEEDQE-----YYSDKSYGVLVF 534
           AL+ LL     +++  L  I++  FS+L++VEED       YY +  Y  + F
Sbjct: 864 ALSSLLRTNHPDVLAVLDSIMNLWFSVLSEVEEDANGDATIYYKNDDYSAVGF 916


>SPBC119.14 |rti1||Rad22 homolog Rti1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 371

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 17/74 (22%), Positives = 35/74 (47%), Gaps = 2/74 (2%)

Query: 96  AGNKLTEHLLIRWPTPNFATTNVVFTDFGSDFMKNEKVYLVCHVVRIGSMDAQNVDHRRS 155
           A +K+TE  +++ P   F    V   +  +  +K+E +    H      + + N+DH RS
Sbjct: 294 AHDKMTEAQVVKIPPVQFMNARVAAAE--NPHIKHEGMAFQLHKKSNSILKSSNIDHNRS 351

Query: 156 SVAQPVSMSTSAGA 169
              +  S++++  A
Sbjct: 352 MPIRRPSLTSNNSA 365


>SPAPJ698.03c |prp12|sap130|U2 snRNP-associated protein Sap130
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1206

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 27/88 (30%), Positives = 39/88 (44%), Gaps = 11/88 (12%)

Query: 14  DMELAVRNSNGQLVDPLKMSTYRLNALHDEANTRIDKNMETTPVTPNVTPAGVRTFTVCV 73
           DM++ V  SNG+LV   +MS        D    ++++  E   +T NVT   +       
Sbjct: 576 DMQIVVALSNGELV-YFEMS-------DDVEGGQLNEYQERKTLTANVTSLALGPVQEGS 627

Query: 74  RVHNFVCRVAD---VAELSLSLHDAAGN 98
           R  NF+C   D   V  LSL L+    N
Sbjct: 628 RRSNFMCLACDDATVRVLSLDLYTTLEN 655


>SPAC4G9.13c |vps26|pep8|retromer complex subunit
           Vps26|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 298

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 12/40 (30%), Positives = 23/40 (57%), Gaps = 1/40 (2%)

Query: 192 KHIQVPFYAYEKENLDA-LLKKVMANRELKDAKHSQGLWV 230
           KH+  P+ +Y  +N+    + +V  +R++KD    + LWV
Sbjct: 108 KHVDKPYESYIGKNVKLRYICRVTVSRKMKDVIREKDLWV 147


>SPAC3F10.04 |gsa1|gsh2|glutathione synthetase large subunit
           Gsa1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 498

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 1/41 (2%)

Query: 60  NVTPAGVRTFTVCVRVHNFVCRVADVAELSLSLHDAAGNKL 100
           N+T      + +  R H    R+ D+AEL+  +HD + NKL
Sbjct: 235 NITDQRTLEYELLNRFHVISKRI-DIAELNSLIHDKSSNKL 274


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.322    0.136    0.407 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,162,818
Number of Sequences: 5004
Number of extensions: 126833
Number of successful extensions: 304
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 302
Number of HSP's gapped (non-prelim): 6
length of query: 767
length of database: 2,362,478
effective HSP length: 78
effective length of query: 689
effective length of database: 1,972,166
effective search space: 1358822374
effective search space used: 1358822374
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 57 (27.1 bits)