GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002321-TA|BGIBMGA002321-PA|undefined
         (767 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_04_0120 - 18175292-18176206,18177315-18177785,18178562-18179635     31   2.6  

>05_04_0120 - 18175292-18176206,18177315-18177785,18178562-18179635
          Length = 819

 Score = 31.5 bits (68), Expect = 2.6
 Identities = 22/90 (24%), Positives = 42/90 (46%), Gaps = 4/90 (4%)

Query: 16  ELAVRNSNGQLVDPLKMSTYR-LNALHDEANTRIDKNMETTPVTPNVTPAGVRTFTVCVR 74
           E+ V  ++G L+  +     + L  L   A  +I    E   VT  VTPA ++ F +C+ 
Sbjct: 483 EVEVVRTHGHLLARVLQEIGKVLLLLAQRAEYQISTGTEARQVTGTVTPAQLKNFALCLH 542

Query: 75  VHNFVCRVADVAELSLSLHDAAGNKLTEHL 104
           + +   R++ +     +L +    KL++ L
Sbjct: 543 LQDVHTRISSIVS---TLPNVTSEKLSKSL 569


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.322    0.136    0.407 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,078,663
Number of Sequences: 37544
Number of extensions: 800777
Number of successful extensions: 1559
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1558
Number of HSP's gapped (non-prelim): 1
length of query: 767
length of database: 14,793,348
effective HSP length: 88
effective length of query: 679
effective length of database: 11,489,476
effective search space: 7801354204
effective search space used: 7801354204
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 64 (29.9 bits)