GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002320-TA|BGIBMGA002320-PA|undefined
         (77 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.    21   1.5  
AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.    21   1.5  
DQ138190-1|ABA03054.1|  135|Tribolium castaneum bursicon-like pr...    20   2.6  
AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1 ...    19   4.5  

>AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.
          Length = 712

 Score = 21.0 bits (42), Expect = 1.5
 Identities = 9/17 (52%), Positives = 11/17 (64%), Gaps = 1/17 (5%)

Query: 24  WKCG-QYSDGVGSITPC 39
           W+ G QY DGV  +T C
Sbjct: 205 WQRGSQYYDGVPFVTQC 221


>AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.
          Length = 717

 Score = 21.0 bits (42), Expect = 1.5
 Identities = 9/17 (52%), Positives = 11/17 (64%), Gaps = 1/17 (5%)

Query: 24  WKCG-QYSDGVGSITPC 39
           W+ G QY DGV  +T C
Sbjct: 205 WQRGSQYYDGVPFVTQC 221


>DQ138190-1|ABA03054.1|  135|Tribolium castaneum bursicon-like
           protein protein.
          Length = 135

 Score = 20.2 bits (40), Expect = 2.6
 Identities = 5/9 (55%), Positives = 8/9 (88%)

Query: 22  RCWKCGQYS 30
           +C+KCG +S
Sbjct: 126 KCYKCGDFS 134


>AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1
          protein protein.
          Length = 371

 Score = 19.4 bits (38), Expect = 4.5
 Identities = 7/21 (33%), Positives = 12/21 (57%)

Query: 55 KFCIYRNANRSTPATQLLRLA 75
          +FC Y N N     +Q L+++
Sbjct: 12 RFCTYGNVNYRQRRSQPLKIS 32


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.322    0.133    0.441 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,895
Number of Sequences: 317
Number of extensions: 404
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of query: 77
length of database: 114,650
effective HSP length: 46
effective length of query: 31
effective length of database: 100,068
effective search space:  3102108
effective search space used:  3102108
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 36 (19.6 bits)
S2: 36 (18.6 bits)