GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002320-TA|BGIBMGA002320-PA|undefined
         (77 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP22H7.07 |prp5|cwf1|WD repeat protein Prp5|Schizosaccharomyce...    25   1.6  
SPBC691.03c |apl3||AP-2 adaptor complex subunit Alp3 |Schizosacc...    24   2.1  
SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce...    23   6.4  

>SPBP22H7.07 |prp5|cwf1|WD repeat protein Prp5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 473

 Score = 24.6 bits (51), Expect = 1.6
 Identities = 11/43 (25%), Positives = 17/43 (39%)

Query: 27  GQYSDGVGSITPCSNRSAARLDECPKDSKFCIYRNANRSTPAT 69
           G      G      +++  RL  C  D    IY+  + +TP T
Sbjct: 416 GSLDSEAGIFASSFDKTGLRLITCEADKSVKIYKQVDNATPET 458


>SPBC691.03c |apl3||AP-2 adaptor complex subunit Alp3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 878

 Score = 24.2 bits (50), Expect = 2.1
 Identities = 12/29 (41%), Positives = 16/29 (55%)

Query: 48  DECPKDSKFCIYRNANRSTPATQLLRLAT 76
           D  P      IYR  N S+P+T++L L T
Sbjct: 505 DSQPVHQFSTIYRKLNVSSPSTRVLLLTT 533


>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2100

 Score = 22.6 bits (46), Expect = 6.4
 Identities = 10/31 (32%), Positives = 16/31 (51%)

Query: 40   SNRSAARLDECPKDSKFCIYRNANRSTPATQ 70
            S  +  +L+E       C+ R+A R +PA Q
Sbjct: 1922 SQDTPTKLNEWANYFMLCLIRHATRDSPAKQ 1952


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.322    0.133    0.441 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 251,962
Number of Sequences: 5004
Number of extensions: 7106
Number of successful extensions: 17
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 14
Number of HSP's gapped (non-prelim): 3
length of query: 77
length of database: 2,362,478
effective HSP length: 57
effective length of query: 20
effective length of database: 2,077,250
effective search space: 41545000
effective search space used: 41545000
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 45 (22.2 bits)