Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002320-TA|BGIBMGA002320-PA|undefined
(77 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0504 + 18180321-18181013 32 0.051
08_02_1082 + 24225592-24226422 28 0.83
03_05_0337 - 23272845-23273271,23273318-23273526,23275615-23276298 27 1.9
12_02_0954 - 24757417-24758214 26 4.4
09_04_0034 + 13968046-13968144,13968332-13968376 25 5.9
01_06_0909 - 32903520-32903828,32903899-32903973,32904068-329042... 25 5.9
01_06_0907 - 32897168-32897476,32897547-32897621,32897716-328978... 25 5.9
02_05_0595 - 30225747-30226589,30227248-30227386,30228734-30228849 25 7.7
01_01_0931 - 7351306-7351371,7351620-7351772,7352343-7352484,735... 25 7.7
>09_04_0504 + 18180321-18181013
Length = 230
Score = 32.3 bits (70), Expect = 0.051
Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 5/37 (13%)
Query: 36 ITPCSNRSAARL-DECPK----DSKFCIYRNANRSTP 67
+TP + +AA + D CP+ D+KFC Y N N S P
Sbjct: 29 LTPAAEEAAAGVGDPCPRCESRDTKFCYYNNYNTSQP 65
>08_02_1082 + 24225592-24226422
Length = 276
Score = 28.3 bits (60), Expect = 0.83
Identities = 14/38 (36%), Positives = 18/38 (47%), Gaps = 4/38 (10%)
Query: 34 GSITPCSNRSAARLDECPK----DSKFCIYRNANRSTP 67
G + +A D CP+ D+KFC Y N N S P
Sbjct: 47 GPAATAAAAAAGEGDPCPRCESRDTKFCYYNNYNTSQP 84
>03_05_0337 -
23272845-23273271,23273318-23273526,23275615-23276298
Length = 439
Score = 27.1 bits (57), Expect = 1.9
Identities = 11/24 (45%), Positives = 15/24 (62%), Gaps = 4/24 (16%)
Query: 48 DECPK----DSKFCIYRNANRSTP 67
++CP+ D+KFC Y N N S P
Sbjct: 33 EQCPRCASHDTKFCYYNNYNTSQP 56
>12_02_0954 - 24757417-24758214
Length = 265
Score = 25.8 bits (54), Expect = 4.4
Identities = 10/24 (41%), Positives = 15/24 (62%), Gaps = 4/24 (16%)
Query: 48 DECPK----DSKFCIYRNANRSTP 67
++CP+ D+KFC Y N N + P
Sbjct: 51 EQCPRCASRDTKFCYYNNYNTAQP 74
>09_04_0034 + 13968046-13968144,13968332-13968376
Length = 47
Score = 25.4 bits (53), Expect = 5.9
Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 3/34 (8%)
Query: 30 SDGVGSITPCSNRSAARLDECPKDSKFCIYRNAN 63
+ GVG +T CS+ + +L K C+ +NAN
Sbjct: 6 ASGVGGVTGCSDEGSLQLRPVRKK---CVTKNAN 36
>01_06_0909 -
32903520-32903828,32903899-32903973,32904068-32904235,
32904508-32904565,32904638-32904879,32905145-32905216,
32905865-32905943,32906734-32907062,32907137-32907256,
32907355-32907429,32908260-32908342,32908942-32908984,
32909271-32909429,32910203-32910281,32910685-32910755,
32910847-32910946,32911023-32911229,32911348-32911442,
32912362-32912436,32912621-32912713,32913078-32913182,
32913851-32913921,32914943-32915096,32916035-32916098,
32916717-32916800,32917543-32917589,32918352-32918411,
32918521-32918592
Length = 1062
Score = 25.4 bits (53), Expect = 5.9
Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Query: 27 GQYSD--GVGSITPCSNRSAARLDECPKDSKFCI 58
G Y D G P SN+ + LD+ K++K+C+
Sbjct: 824 GYYGDVKNEGFDRPNSNKKSIDLDDSHKETKYCL 857
>01_06_0907 -
32897168-32897476,32897547-32897621,32897716-32897883,
32898156-32898213,32898286-32898527,32898630-32898726,
32898827-32898921
Length = 347
Score = 25.4 bits (53), Expect = 5.9
Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Query: 27 GQYSD--GVGSITPCSNRSAARLDECPKDSKFCI 58
G Y D G P SN+ + LD+ K++K+C+
Sbjct: 109 GYYGDVKNEGFDRPNSNKKSIDLDDSHKETKYCL 142
>02_05_0595 - 30225747-30226589,30227248-30227386,30228734-30228849
Length = 365
Score = 25.0 bits (52), Expect = 7.7
Identities = 12/38 (31%), Positives = 18/38 (47%), Gaps = 4/38 (10%)
Query: 34 GSITPCSNRSAARLDECPK----DSKFCIYRNANRSTP 67
G + C + +CP+ ++KFC Y N N S P
Sbjct: 114 GPASRCGGIPSPEAVKCPRCESTNTKFCYYNNYNLSQP 151
>01_01_0931 -
7351306-7351371,7351620-7351772,7352343-7352484,
7352604-7352791,7353117-7353179,7353541-7353585,
7353658-7353792,7354515-7354623,7355032-7355084,
7355168-7355317,7355714-7355722,7356161-7356577
Length = 509
Score = 25.0 bits (52), Expect = 7.7
Identities = 9/20 (45%), Positives = 12/20 (60%)
Query: 48 DECPKDSKFCIYRNANRSTP 67
D PKD+ F +Y+ A R P
Sbjct: 336 DHLPKDTYFGLYKEATRGNP 355
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.322 0.133 0.441
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,680,629
Number of Sequences: 37544
Number of extensions: 47591
Number of successful extensions: 135
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 131
Number of HSP's gapped (non-prelim): 9
length of query: 77
length of database: 14,793,348
effective HSP length: 56
effective length of query: 21
effective length of database: 12,690,884
effective search space: 266508564
effective search space used: 266508564
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 52 (25.0 bits)
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