GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002320-TA|BGIBMGA002320-PA|undefined
         (77 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_40410| Best HMM Match : ANF_receptor (HMM E-Value=0)                28   1.2  
SB_25463| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   4.9  
SB_25129| Best HMM Match : 7tm_1 (HMM E-Value=2.4e-24)                 25   8.6  

>SB_40410| Best HMM Match : ANF_receptor (HMM E-Value=0)
          Length = 888

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 2/38 (5%)

Query: 23  CWKCGQYSDG-VGSITPCSNRSAARL-DECPKDSKFCI 58
           CW+C Q +DG   SI+   N +   +  +  KD +FC+
Sbjct: 526 CWECIQCADGFANSISGAGNCTTCPIHQKSDKDREFCV 563


>SB_25463| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 273

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 10/28 (35%), Positives = 14/28 (50%)

Query: 39  CSNRSAARLDECPKDSKFCIYRNANRST 66
           C NR     +ECP DS+    +N   +T
Sbjct: 162 CENRRVIAFEECPPDSRLMQTKNTFPAT 189


>SB_25129| Best HMM Match : 7tm_1 (HMM E-Value=2.4e-24)
          Length = 540

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 13/39 (33%), Positives = 18/39 (46%), Gaps = 1/39 (2%)

Query: 26  CGQYS-DGVGSITPCSNRSAARLDECPKDSKFCIYRNAN 63
           CG Y  D  GSI     RS   +  CP+     + R+A+
Sbjct: 300 CGLYKRDRPGSINDFHRRSEVHMPGCPRKMNSTLARSAH 338


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.322    0.133    0.441 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,017,697
Number of Sequences: 59808
Number of extensions: 63274
Number of successful extensions: 106
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 105
Number of HSP's gapped (non-prelim): 3
length of query: 77
length of database: 16,821,457
effective HSP length: 55
effective length of query: 22
effective length of database: 13,532,017
effective search space: 297704374
effective search space used: 297704374
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 52 (25.0 bits)