GeneModel BLAST Result against fruitfly

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002320-TA|BGIBMGA002320-PA|undefined
         (77 letters)

Database: fruitfly 
           52,641 sequences; 24,830,863 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY060351-1|AAL25390.1|  180|Drosophila melanogaster GH27383p pro...    48   2e-06
AE014297-900|AAF54355.2|  180|Drosophila melanogaster CG8861-PA ...    48   2e-06
AE014297-444|AAF54133.1|  278|Drosophila melanogaster CG10296-PA...    25   9.6  

>AY060351-1|AAL25390.1|  180|Drosophila melanogaster GH27383p
           protein.
          Length = 180

 Score = 47.6 bits (108), Expect = 2e-06
 Identities = 24/51 (47%), Positives = 32/51 (62%), Gaps = 5/51 (9%)

Query: 21  IRCWKCGQYSDGVGSITPCSNRSA----ARLDECPKDS-KFCIYRNANRST 66
           ++C  CGQY++GVGSITPC+N +       L EC K S KFC+   +  ST
Sbjct: 71  LKCHMCGQYNEGVGSITPCTNYTTDIAHLYLKECTKKSEKFCVKYVSELST 121


>AE014297-900|AAF54355.2|  180|Drosophila melanogaster CG8861-PA
           protein.
          Length = 180

 Score = 47.6 bits (108), Expect = 2e-06
 Identities = 24/51 (47%), Positives = 32/51 (62%), Gaps = 5/51 (9%)

Query: 21  IRCWKCGQYSDGVGSITPCSNRSA----ARLDECPKDS-KFCIYRNANRST 66
           ++C  CGQY++GVGSITPC+N +       L EC K S KFC+   +  ST
Sbjct: 71  LKCHMCGQYNEGVGSITPCTNYTTDIAHLYLKECTKKSEKFCVKYVSELST 121


>AE014297-444|AAF54133.1|  278|Drosophila melanogaster CG10296-PA
           protein.
          Length = 278

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 10/37 (27%), Positives = 18/37 (48%)

Query: 41  NRSAARLDECPKDSKFCIYRNANRSTPATQLLRLATP 77
           N +A + +  P++ +  +YR   R  P +Q     TP
Sbjct: 74  NAAAVQEERGPRNQQVALYRTGRRQAPPSQAAPSPTP 110


  Database: fruitfly
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 24,830,863
  Number of sequences in database:  52,641
  
Lambda     K      H
   0.322    0.133    0.441 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,939,004
Number of Sequences: 52641
Number of extensions: 92564
Number of successful extensions: 170
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 167
Number of HSP's gapped (non-prelim): 3
length of query: 77
length of database: 24,830,863
effective HSP length: 57
effective length of query: 20
effective length of database: 21,830,326
effective search space: 436606520
effective search space used: 436606520
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 53 (25.4 bits)