GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002320-TA|BGIBMGA002320-PA|undefined
         (77 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z48638-6|CAA88567.1|  541|Caenorhabditis elegans Hypothetical pr...    26   3.7  
Z80215-9|CAB02276.1|  327|Caenorhabditis elegans Hypothetical pr...    25   8.4  

>Z48638-6|CAA88567.1|  541|Caenorhabditis elegans Hypothetical
          protein ZK892.3 protein.
          Length = 541

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 12/39 (30%), Positives = 19/39 (48%), Gaps = 1/39 (2%)

Query: 25 KC-GQYSDGVGSITPCSNRSAARLDECPKDSKFCIYRNA 62
          KC   Y +   +I    N S ++ DEC  D K+  + +A
Sbjct: 54 KCLSDYDENKPNICLVPNGSKSQFDECVNDKKYLYFESA 92


>Z80215-9|CAB02276.1|  327|Caenorhabditis elegans Hypothetical
          protein C36B1.11 protein.
          Length = 327

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 14/46 (30%), Positives = 27/46 (58%), Gaps = 2/46 (4%)

Query: 25 KCGQYSDGVGSITPCSNRSA-ARLDECPKDS-KFCIYRNANRSTPA 68
          KC  Y+D +G+ T CS  +  ++L  C  +  K+ + ++++  TPA
Sbjct: 5  KCSAYTDTMGTCTICSIFAPHSQLFICRHEGCKYALKQSSSIMTPA 50


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.322    0.133    0.441 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,469,745
Number of Sequences: 27539
Number of extensions: 44531
Number of successful extensions: 127
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 126
Number of HSP's gapped (non-prelim): 2
length of query: 77
length of database: 12,573,161
effective HSP length: 57
effective length of query: 20
effective length of database: 11,003,438
effective search space: 220068760
effective search space used: 220068760
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 51 (24.6 bits)