GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002320-TA|BGIBMGA002320-PA|undefined
         (77 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    19   5.4  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    19   5.4  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    19   5.4  

>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 19.4 bits (38), Expect = 5.4
 Identities = 12/48 (25%), Positives = 21/48 (43%), Gaps = 1/48 (2%)

Query: 29  YSDGVGSITPCSNRSAARLDECPKDSKFCIYRNANRSTPATQLLRLAT 76
           + D + S+TP +NR      E  ++   C+ +   R+ P    L   T
Sbjct: 263 FDDYMASLTPDTNRRNPWFSEYWEEVFDCLLKK-ERNGPTQTTLNATT 309


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 19.4 bits (38), Expect = 5.4
 Identities = 6/9 (66%), Positives = 8/9 (88%)

Query: 55  KFCIYRNAN 63
           +FCI+R AN
Sbjct: 496 QFCIFRTAN 504


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 19.4 bits (38), Expect = 5.4
 Identities = 12/48 (25%), Positives = 21/48 (43%), Gaps = 1/48 (2%)

Query: 29  YSDGVGSITPCSNRSAARLDECPKDSKFCIYRNANRSTPATQLLRLAT 76
           + D + S+TP +NR      E  ++   C+ +   R+ P    L   T
Sbjct: 353 FDDYMASLTPDTNRRNPWFSEYWEEVFDCLLKK-ERNGPTQTTLNATT 399


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.322    0.133    0.441 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,258
Number of Sequences: 429
Number of extensions: 415
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 77
length of database: 140,377
effective HSP length: 46
effective length of query: 31
effective length of database: 120,643
effective search space:  3739933
effective search space used:  3739933
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 36 (19.6 bits)
S2: 36 (18.6 bits)