GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002319-TA|BGIBMGA002319-PA|undefined
         (66 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_02_0128 - 6890918-6891900,6892929-6893124                           27   1.9  
12_02_1113 - 26165074-26165889,26166077-26166202,26166294-261664...    26   3.3  
12_01_0333 + 2570807-2571061,2571186-2571397,2571961-2572225,257...    26   3.3  
05_02_0131 - 6919143-6920125,6920334-6920529                           26   4.3  
12_02_0911 + 24236374-24237582                                         25   7.6  

>05_02_0128 - 6890918-6891900,6892929-6893124
          Length = 392

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 13/37 (35%), Positives = 23/37 (62%), Gaps = 1/37 (2%)

Query: 9  IPEPSWVTELKDKIKKLITLHGYENAKDHI-KQLVKE 44
          + E   +TELKDK+K++    G E    H+ ++L++E
Sbjct: 49 LTESEHLTELKDKMKRICHRSGIEKRYIHLDEKLIRE 85


>12_02_1113 -
           26165074-26165889,26166077-26166202,26166294-26166457,
           26166539-26166576,26166670-26166885,26166984-26167145,
           26167212-26167497,26167585-26167761,26167864-26167971,
           26168076-26168175,26168283-26168359,26168608-26168803,
           26169032-26169363,26169476-26169589,26169651-26169753
          Length = 1004

 Score = 26.2 bits (55), Expect = 3.3
 Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 1/45 (2%)

Query: 17  ELKDKIKKLITLHGYENAKDHIKQLVKECRVYYMYI-LSIYQDHV 60
           E K+K K L+T++  E  K+   QL+ E ++   ++   I QDH+
Sbjct: 717 EAKNKAKDLLTMNLQEKIKELEAQLLVERKIARQHVDNKIAQDHL 761


>12_01_0333 +
          2570807-2571061,2571186-2571397,2571961-2572225,
          2572542-2572841
          Length = 343

 Score = 26.2 bits (55), Expect = 3.3
 Identities = 12/27 (44%), Positives = 19/27 (70%), Gaps = 1/27 (3%)

Query: 19 KDKIK-KLITLHGYENAKDHIKQLVKE 44
          KDK K K+I++H +++ KD   Q+ KE
Sbjct: 60 KDKAKFKIISVHAFDSTKDFPLQVSKE 86


>05_02_0131 - 6919143-6920125,6920334-6920529
          Length = 392

 Score = 25.8 bits (54), Expect = 4.3
 Identities = 12/31 (38%), Positives = 21/31 (67%), Gaps = 1/31 (3%)

Query: 15 VTELKDKIKKLITLHGYENAKDHI-KQLVKE 44
          +TELKDK+K++    G E    H+ ++L++E
Sbjct: 55 LTELKDKMKRICHRSGIEKRYIHLDEKLIRE 85


>12_02_0911 + 24236374-24237582
          Length = 402

 Score = 25.0 bits (52), Expect = 7.6
 Identities = 11/30 (36%), Positives = 19/30 (63%), Gaps = 1/30 (3%)

Query: 8   QIPEPSWVTELKDKIKKL-ITLHGYENAKD 36
           Q P   WV E+KD I+K+ + L  ++ A++
Sbjct: 76  QRPSGRWVAEIKDTIQKIRVWLGTFDTAEE 105


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.320    0.139    0.410 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,894,805
Number of Sequences: 37544
Number of extensions: 55390
Number of successful extensions: 153
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 152
Number of HSP's gapped (non-prelim): 5
length of query: 66
length of database: 14,793,348
effective HSP length: 46
effective length of query: 20
effective length of database: 13,066,324
effective search space: 261326480
effective search space used: 261326480
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 52 (25.0 bits)