GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002319-TA|BGIBMGA002319-PA|undefined
         (66 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_51023| Best HMM Match : POLO_box (HMM E-Value=3.6)                  26   3.7  
SB_52432| Best HMM Match : NDUF_B7 (HMM E-Value=0.47)                  25   6.5  
SB_40383| Best HMM Match : IQ (HMM E-Value=0.00047)                    25   6.5  
SB_23899| Best HMM Match : TNFR_c6 (HMM E-Value=7.1e-09)               25   8.6  
SB_48035| Best HMM Match : rve (HMM E-Value=0.00061)                   25   8.6  
SB_38762| Best HMM Match : Pep_M12B_propep (HMM E-Value=0.0043)        25   8.6  

>SB_51023| Best HMM Match : POLO_box (HMM E-Value=3.6)
          Length = 283

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 11/33 (33%), Positives = 16/33 (48%)

Query: 7   IQIPEPSWVTELKDKIKKLITLHGYENAKDHIK 39
           IQI  P+WVT        ++T+  Y     H+K
Sbjct: 112 IQIMTPAWVTSTNQVDTIIVTIEDYSRDYTHMK 144


>SB_52432| Best HMM Match : NDUF_B7 (HMM E-Value=0.47)
          Length = 1250

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 12/23 (52%), Positives = 13/23 (56%)

Query: 23  KKLITLHGYENAKDHIKQLVKEC 45
           K LI LHG   A D I  LV+ C
Sbjct: 200 KMLIILHGLSIAHDEILWLVRHC 222


>SB_40383| Best HMM Match : IQ (HMM E-Value=0.00047)
          Length = 841

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 11/33 (33%), Positives = 20/33 (60%), Gaps = 3/33 (9%)

Query: 12  PSWVTELKDKIKKLITLHGYENAKDHIKQLVKE 44
           PS++ +LK   KK    H Y+ A +H+ +L+ +
Sbjct: 200 PSFLIDLKAPFKKE---HNYDEALNHVNKLISQ 229


>SB_23899| Best HMM Match : TNFR_c6 (HMM E-Value=7.1e-09)
          Length = 533

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 11/22 (50%), Positives = 14/22 (63%)

Query: 31  YENAKDHIKQLVKECRVYYMYI 52
           YENA+D   +L KE R  Y Y+
Sbjct: 367 YENAQDACTELDKEKRGTYQYV 388


>SB_48035| Best HMM Match : rve (HMM E-Value=0.00061)
          Length = 206

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 11/17 (64%), Positives = 12/17 (70%)

Query: 16  TELKDKIKKLITLHGYE 32
           TE K  IKKL+T HG E
Sbjct: 147 TEFKGAIKKLLTDHGVE 163


>SB_38762| Best HMM Match : Pep_M12B_propep (HMM E-Value=0.0043)
          Length = 410

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 13/33 (39%), Positives = 16/33 (48%), Gaps = 1/33 (3%)

Query: 28  LHGYENAKDHIKQLVKECRVYYMYILSIYQDHV 60
           LH Y  A   I    K CR+ YM    +Y +HV
Sbjct: 203 LHRYRRAASGIDPTKKTCRL-YMQADHLYTEHV 234


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.320    0.139    0.410 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,296,899
Number of Sequences: 59808
Number of extensions: 69682
Number of successful extensions: 362
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 358
Number of HSP's gapped (non-prelim): 6
length of query: 66
length of database: 16,821,457
effective HSP length: 45
effective length of query: 21
effective length of database: 14,130,097
effective search space: 296732037
effective search space used: 296732037
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 52 (25.0 bits)