GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002319-TA|BGIBMGA002319-PA|undefined
         (66 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    20   2.2  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    19   3.9  
DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    19   6.7  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               18   8.9  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    18   8.9  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 20.2 bits (40), Expect = 2.2
 Identities = 9/20 (45%), Positives = 12/20 (60%)

Query: 21   KIKKLITLHGYENAKDHIKQ 40
            +IK L+T HG +     IKQ
Sbjct: 1032 QIKSLLTGHGLQGQTIFIKQ 1051


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 19.4 bits (38), Expect = 3.9
 Identities = 9/33 (27%), Positives = 15/33 (45%)

Query: 11  EPSWVTELKDKIKKLITLHGYENAKDHIKQLVK 43
           EP+W T +  K +   +       K H KQ+ +
Sbjct: 419 EPAWKTHVWKKGRDKKSTSKKPRRKFHFKQIAR 451


>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 18.6 bits (36), Expect = 6.7
 Identities = 7/17 (41%), Positives = 13/17 (76%)

Query: 17  ELKDKIKKLITLHGYEN 33
           +LK+ IKKL+ ++ Y +
Sbjct: 468 QLKNIIKKLLQINCYRS 484


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 18.2 bits (35), Expect = 8.9
 Identities = 11/29 (37%), Positives = 13/29 (44%)

Query: 13  SWVTELKDKIKKLITLHGYENAKDHIKQL 41
           SW    K    KL+   G+E  K   KQL
Sbjct: 153 SWEVYTKGIGAKLLLQMGFEPGKGLGKQL 181


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 18.2 bits (35), Expect = 8.9
 Identities = 9/29 (31%), Positives = 14/29 (48%)

Query: 23  KKLITLHGYENAKDHIKQLVKECRVYYMY 51
           KK   + GY N      +++K  +V  MY
Sbjct: 203 KKGFHMDGYTNNSKWDFKVIKATKVLKMY 231


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.320    0.139    0.410 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,084
Number of Sequences: 429
Number of extensions: 569
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of query: 66
length of database: 140,377
effective HSP length: 44
effective length of query: 22
effective length of database: 121,501
effective search space:  2673022
effective search space used:  2673022
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (19.0 bits)
S2: 35 (18.2 bits)