GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002318-TA|BGIBMGA002318-PA|IPR001478|PDZ/DHR/GLGF,
IPR001940|Peptidase S1C, HrtA/DegP2/Q/S, IPR002731|ATPase,
BadF/BadG/BcrA/BcrD type, IPR001254|Peptidase S1 and S6,
chymotrypsin/Hap, IPR009003|Peptidase, trypsin-like serine and
cysteine
         (579 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain tran...    24   2.5  
AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein p...    24   2.5  
AM292379-1|CAL23191.2|  376|Tribolium castaneum gustatory recept...    23   5.8  
AF230313-1|AAF64147.1|  210|Tribolium castaneum labial protein p...    23   5.8  

>AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain
           transcription factor Labialprotein.
          Length = 353

 Score = 24.2 bits (50), Expect = 2.5
 Identities = 13/54 (24%), Positives = 26/54 (48%), Gaps = 2/54 (3%)

Query: 204 QVFHKYRPDAVNGDAKVKHNGQVNGNLNGVENCGATIGFIGYFSLREKVTAATV 257
           Q  H+Y+ +A+ GD +++ +  V  NL+ V      +    +  ++  V   TV
Sbjct: 160 QHLHRYKEEALQGDGRMRQH--VMHNLSSVPQPQPVLPTYKWMQVKRNVPKPTV 211


>AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein
           protein.
          Length = 253

 Score = 24.2 bits (50), Expect = 2.5
 Identities = 13/54 (24%), Positives = 26/54 (48%), Gaps = 2/54 (3%)

Query: 204 QVFHKYRPDAVNGDAKVKHNGQVNGNLNGVENCGATIGFIGYFSLREKVTAATV 257
           Q  H+Y+ +A+ GD +++ +  V  NL+ V      +    +  ++  V   TV
Sbjct: 160 QHLHRYKEEALQGDGRMRQH--VMHNLSSVPQPQPVLPTYKWMQVKRNVPKPTV 211


>AM292379-1|CAL23191.2|  376|Tribolium castaneum gustatory receptor
           candidate 58 protein.
          Length = 376

 Score = 23.0 bits (47), Expect = 5.8
 Identities = 9/13 (69%), Positives = 11/13 (84%)

Query: 358 LRIPVKGLPTMKL 370
           +RI  KGLPT+KL
Sbjct: 154 VRIAAKGLPTLKL 166


>AF230313-1|AAF64147.1|  210|Tribolium castaneum labial protein
           protein.
          Length = 210

 Score = 23.0 bits (47), Expect = 5.8
 Identities = 10/30 (33%), Positives = 19/30 (63%), Gaps = 2/30 (6%)

Query: 204 QVFHKYRPDAVNGDAKVKHNGQVNGNLNGV 233
           Q  H+Y+ +A+ GD +++ +  V  NL+ V
Sbjct: 160 QHLHRYKEEALQGDGRMRQH--VMHNLSSV 187


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.318    0.136    0.398 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 122,679
Number of Sequences: 317
Number of extensions: 4797
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 3
Number of HSP's gapped (non-prelim): 4
length of query: 579
length of database: 114,650
effective HSP length: 60
effective length of query: 519
effective length of database: 95,630
effective search space: 49631970
effective search space used: 49631970
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 46 (22.6 bits)