GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002318-TA|BGIBMGA002318-PA|IPR001478|PDZ/DHR/GLGF,
IPR001940|Peptidase S1C, HrtA/DegP2/Q/S, IPR002731|ATPase,
BadF/BadG/BcrA/BcrD type, IPR001254|Peptidase S1 and S6,
chymotrypsin/Hap, IPR009003|Peptidase, trypsin-like serine and
cysteine
         (579 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    27   0.32 
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    24   3.0  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    24   4.0  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    23   9.2  

>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 27.5 bits (58), Expect = 0.32
 Identities = 15/36 (41%), Positives = 19/36 (52%)

Query: 222 HNGQVNGNLNGVENCGATIGFIGYFSLREKVTAATV 257
           ++G  N NLNG  NC ++I   G  S  E   AA V
Sbjct: 144 YDGGANLNLNGTVNCTSSIASSGVVSAGECGPAADV 179


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 24.2 bits (50), Expect = 3.0
 Identities = 14/73 (19%), Positives = 34/73 (46%), Gaps = 1/73 (1%)

Query: 447 SMKVTYGISFAIPIDYVKEFLAKHKTKSPQVSKRYLGITMLSLTPSILMELKMRNPEMPT 506
           S+ ++  +S  +    + E +       P + K YL  TM+ +T S+++ + + N    +
Sbjct: 269 SLSISILLSLTVFFLLLAEIIPPTSLTVPLLGK-YLLFTMVLVTLSVVVTIAVLNVNFRS 327

Query: 507 DIQHGILVWKVII 519
            + H +  W  ++
Sbjct: 328 PVTHRMARWVRVV 340


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 23.8 bits (49), Expect = 4.0
 Identities = 7/17 (41%), Positives = 14/17 (82%)

Query: 511 GILVWKVIIGSPAFNGG 527
           G+L+++++ G+P F GG
Sbjct: 552 GVLMFELLTGTPPFTGG 568


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 22.6 bits (46), Expect = 9.2
 Identities = 11/28 (39%), Positives = 16/28 (57%), Gaps = 2/28 (7%)

Query: 407 GSELGLQDRNIVYIQTDAPITFGNSGGP 434
           G E+G++DR   Y +T  P   G + GP
Sbjct: 386 GDEIGMEDRWFTYQETVDPA--GCNAGP 411


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.318    0.136    0.398 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 149,887
Number of Sequences: 429
Number of extensions: 6148
Number of successful extensions: 14
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 11
Number of HSP's gapped (non-prelim): 4
length of query: 579
length of database: 140,377
effective HSP length: 61
effective length of query: 518
effective length of database: 114,208
effective search space: 59159744
effective search space used: 59159744
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 46 (22.6 bits)