Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002317-TA|BGIBMGA002317-PA|IPR002731|ATPase,
BadF/BadG/BcrA/BcrD type
(144 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U23522-2|AAC46818.1| 521|Caenorhabditis elegans Hypothetical pr... 41 4e-04
Z47070-8|CAA87345.1| 5198|Caenorhabditis elegans Hypothetical pr... 31 0.32
Z47070-7|CAA87344.1| 5175|Caenorhabditis elegans Hypothetical pr... 31 0.32
Z47068-9|CAA87336.1| 5198|Caenorhabditis elegans Hypothetical pr... 31 0.32
Z47068-8|CAA87335.1| 5175|Caenorhabditis elegans Hypothetical pr... 31 0.32
AF074901-1|AAC26792.1| 5198|Caenorhabditis elegans hemicentin pr... 31 0.32
U29082-3|AAT92083.1| 1178|Caenorhabditis elegans Troponin t prot... 29 1.7
U29082-2|AAT92082.1| 350|Caenorhabditis elegans Troponin t prot... 29 1.7
>U23522-2|AAC46818.1| 521|Caenorhabditis elegans Hypothetical
protein W06B4.2 protein.
Length = 521
Score = 40.7 bits (91), Expect = 4e-04
Identities = 37/118 (31%), Positives = 48/118 (40%), Gaps = 3/118 (2%)
Query: 28 GATHSNLVICDEAGRVVGRAKGLGTNHWTLGIDGCANRIISMLHEAKEDAGIPKDQALDS 87
GAT S LVI D + GTN + RI + E E + L +
Sbjct: 202 GATGSKLVIIDADTNQRYTSSTEGTNFFLTDHTIVCKRIADWILEVFEKEKLDIKN-LKA 260
Query: 88 LGLTLSGCEQESSNAELVARVKDLDPMCAKAVYAASDTAGSLFTGAP--DGGMVLIAG 143
LGL LSG E E N + V + + Y SD +L P + G+VLIAG
Sbjct: 261 LGLGLSGAEDEEFNKKFVDYFRQNHGNVTENFYLTSDAVMTLLANFPGEENGIVLIAG 318
>Z47070-8|CAA87345.1| 5198|Caenorhabditis elegans Hypothetical
protein F15G9.4b protein.
Length = 5198
Score = 31.1 bits (67), Expect = 0.32
Identities = 16/46 (34%), Positives = 28/46 (60%), Gaps = 5/46 (10%)
Query: 67 ISMLHEAKEDAG-----IPKDQALDSLGLTLSGCEQESSNAELVAR 107
+ +++EA+E G IP D+ L L ++LSG + +S N ++V R
Sbjct: 216 VHLMYEARERGGTVSRNIPVDKHLSELTISLSGDKDDSDNLDIVLR 261
>Z47070-7|CAA87344.1| 5175|Caenorhabditis elegans Hypothetical
protein F15G9.4a protein.
Length = 5175
Score = 31.1 bits (67), Expect = 0.32
Identities = 16/46 (34%), Positives = 28/46 (60%), Gaps = 5/46 (10%)
Query: 67 ISMLHEAKEDAG-----IPKDQALDSLGLTLSGCEQESSNAELVAR 107
+ +++EA+E G IP D+ L L ++LSG + +S N ++V R
Sbjct: 216 VHLMYEARERGGTVSRNIPVDKHLSELTISLSGDKDDSDNLDIVLR 261
>Z47068-9|CAA87336.1| 5198|Caenorhabditis elegans Hypothetical
protein F15G9.4b protein.
Length = 5198
Score = 31.1 bits (67), Expect = 0.32
Identities = 16/46 (34%), Positives = 28/46 (60%), Gaps = 5/46 (10%)
Query: 67 ISMLHEAKEDAG-----IPKDQALDSLGLTLSGCEQESSNAELVAR 107
+ +++EA+E G IP D+ L L ++LSG + +S N ++V R
Sbjct: 216 VHLMYEARERGGTVSRNIPVDKHLSELTISLSGDKDDSDNLDIVLR 261
>Z47068-8|CAA87335.1| 5175|Caenorhabditis elegans Hypothetical
protein F15G9.4a protein.
Length = 5175
Score = 31.1 bits (67), Expect = 0.32
Identities = 16/46 (34%), Positives = 28/46 (60%), Gaps = 5/46 (10%)
Query: 67 ISMLHEAKEDAG-----IPKDQALDSLGLTLSGCEQESSNAELVAR 107
+ +++EA+E G IP D+ L L ++LSG + +S N ++V R
Sbjct: 216 VHLMYEARERGGTVSRNIPVDKHLSELTISLSGDKDDSDNLDIVLR 261
>AF074901-1|AAC26792.1| 5198|Caenorhabditis elegans hemicentin
precursor protein.
Length = 5198
Score = 31.1 bits (67), Expect = 0.32
Identities = 16/46 (34%), Positives = 28/46 (60%), Gaps = 5/46 (10%)
Query: 67 ISMLHEAKEDAG-----IPKDQALDSLGLTLSGCEQESSNAELVAR 107
+ +++EA+E G IP D+ L L ++LSG + +S N ++V R
Sbjct: 216 VHLMYEARERGGTVSRNIPVDKHLSELTISLSGDKDDSDNLDIVLR 261
>U29082-3|AAT92083.1| 1178|Caenorhabditis elegans Troponin t protein
3, isoform b protein.
Length = 1178
Score = 28.7 bits (61), Expect = 1.7
Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 6/75 (8%)
Query: 49 GLGTNHWTLGIDGCANRIISMLHEAKEDAGIPKDQALDSLGLTLSGCEQESSNA------ 102
G G ++T+ N + +AK++ G+ K+Q D+ L+ +E NA
Sbjct: 991 GQGGRNFTVAKKAAQNDKFGNIVQAKQEMGMTKEQQEDAKRAFLAAIRKEIPNASEVPQS 1050
Query: 103 ELVARVKDLDPMCAK 117
EL A++K+L K
Sbjct: 1051 ELKAKIKELHQRICK 1065
>U29082-2|AAT92082.1| 350|Caenorhabditis elegans Troponin t protein
3, isoform a protein.
Length = 350
Score = 28.7 bits (61), Expect = 1.7
Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 6/75 (8%)
Query: 49 GLGTNHWTLGIDGCANRIISMLHEAKEDAGIPKDQALDSLGLTLSGCEQESSNA------ 102
G G ++T+ N + +AK++ G+ K+Q D+ L+ +E NA
Sbjct: 157 GQGGRNFTVAKKAAQNDKFGNIVQAKQEMGMTKEQQEDAKRAFLAAIRKEIPNASEVPQS 216
Query: 103 ELVARVKDLDPMCAK 117
EL A++K+L K
Sbjct: 217 ELKAKIKELHQRICK 231
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,281,765
Number of Sequences: 27539
Number of extensions: 117806
Number of successful extensions: 259
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 251
Number of HSP's gapped (non-prelim): 8
length of query: 144
length of database: 12,573,161
effective HSP length: 75
effective length of query: 69
effective length of database: 10,507,736
effective search space: 725033784
effective search space used: 725033784
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 55 (26.2 bits)
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