GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002317-TA|BGIBMGA002317-PA|IPR002731|ATPase,
BadF/BadG/BcrA/BcrD type
         (144 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    23   1.7  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    20   9.0  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    20   9.0  

>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 22.6 bits (46), Expect = 1.7
 Identities = 11/32 (34%), Positives = 16/32 (50%)

Query: 52  TNHWTLGIDGCANRIISMLHEAKEDAGIPKDQ 83
           + H TLG+   A R I  L E +    + K+Q
Sbjct: 82  SRHTTLGLLTKAKRFIKSLEERERKHAVHKEQ 113


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 20.2 bits (40), Expect = 9.0
 Identities = 8/18 (44%), Positives = 12/18 (66%)

Query: 123 SDTAGSLFTGAPDGGMVL 140
           S +AG + TGA  G +V+
Sbjct: 24  SSSAGGVVTGASGGSIVV 41


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 20.2 bits (40), Expect = 9.0
 Identities = 7/22 (31%), Positives = 12/22 (54%)

Query: 13   NKPTSRIRWEILVLRGATHSNL 34
            N P   ++W+I  ++G   S L
Sbjct: 1012 NTPKGNMQWKIWPMKGEEKSRL 1033


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 35,803
Number of Sequences: 429
Number of extensions: 1140
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 144
length of database: 140,377
effective HSP length: 52
effective length of query: 92
effective length of database: 118,069
effective search space: 10862348
effective search space used: 10862348
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)
S2: 40 (20.2 bits)