GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002316-TA|BGIBMGA002316-PA|IPR000276|Rhodopsin-like GPCR
superfamily
         (368 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC144.10c |gwt1|mug59|pig-W|Schizosaccharomyces pombe|chr 1|||...    28   1.8  
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi...    26   7.4  
SPBC365.02c |cox10||protoheme IX farnesyltransferase|Schizosacch...    26   9.7  
SPCC1322.03 |||TRP-like ion channel|Schizosaccharomyces pombe|ch...    26   9.7  

>SPAC144.10c |gwt1|mug59|pig-W|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 459

 Score = 28.3 bits (60), Expect = 1.8
 Identities = 10/20 (50%), Positives = 14/20 (70%)

Query: 309 LGIIVGGFVFCWLPFFSVYV 328
           LG +V  F+FC +P F +YV
Sbjct: 50  LGFLVEFFIFCLIPLFVIYV 69


>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 374

 Score = 26.2 bits (55), Expect = 7.4
 Identities = 15/57 (26%), Positives = 29/57 (50%), Gaps = 2/57 (3%)

Query: 106 DAGYVVYSALG--SFYIPMFVMLFFYWRIYKAAVRTTKAINQGFRTTKGRGLGSRFD 160
           +AG +V   +G  +F + M + +F Y+   +  +R + + N+G   +    L SR D
Sbjct: 289 NAGAIVGIVIGCVAFAVVMALCIFLYFYFRRFKIRMSDSANEGKYPSYASELDSRLD 345


>SPBC365.02c |cox10||protoheme IX
           farnesyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 387

 Score = 25.8 bits (54), Expect = 9.7
 Identities = 10/19 (52%), Positives = 11/19 (57%)

Query: 59  IAGLWVLSFVICFPPLVGW 77
           I   WV S V   PPL+GW
Sbjct: 212 IVNTWVGSLVGAIPPLMGW 230


>SPCC1322.03 |||TRP-like ion channel|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 862

 Score = 25.8 bits (54), Expect = 9.7
 Identities = 13/30 (43%), Positives = 15/30 (50%), Gaps = 1/30 (3%)

Query: 319 CWLPFFSVYVVRAFCGECVTPIVFSVLFWL 348
           CWLPF  V V+  F    V  +V   L WL
Sbjct: 326 CWLPFLIVMVIYLFAALFVALLVI-FLKWL 354


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.327    0.141    0.476 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,578,230
Number of Sequences: 5004
Number of extensions: 60195
Number of successful extensions: 132
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 130
Number of HSP's gapped (non-prelim): 4
length of query: 368
length of database: 2,362,478
effective HSP length: 74
effective length of query: 294
effective length of database: 1,992,182
effective search space: 585701508
effective search space used: 585701508
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 54 (25.8 bits)