GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002316-TA|BGIBMGA002316-PA|IPR000276|Rhodopsin-like GPCR
superfamily
         (368 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0399 - 3015654-3015702,3016160-3017202                           31   1.9  
06_01_0522 + 3787054-3788004,3788094-3788422,3788640-3788796           30   3.4  
03_02_0910 + 12317493-12317960,12319678-12319734,12320592-123206...    29   4.5  

>11_01_0399 - 3015654-3015702,3016160-3017202
          Length = 363

 Score = 30.7 bits (66), Expect = 1.9
 Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 3/53 (5%)

Query: 299 FKMETKAAKTLGIIVGGFVFCWLP--FFSVYVVRAFCGECVTPIVFSVL-FWL 348
           F+     A  L ++    +FCW+P  + + YV+ A  G  V  +   VL FWL
Sbjct: 275 FQWTAFVALPLSLVSFNALFCWVPICYVAWYVLGAILGALVGSVAIEVLFFWL 327


>06_01_0522 + 3787054-3788004,3788094-3788422,3788640-3788796
          Length = 478

 Score = 29.9 bits (64), Expect = 3.4
 Identities = 13/31 (41%), Positives = 16/31 (51%), Gaps = 1/31 (3%)

Query: 61  GLWVLSFVICFPPLVGWKDKRDDDGTHKEGW 91
           G W   +  C PP  G+K   DDD  H+ GW
Sbjct: 251 GGWPALYPACLPP-PGFKKLDDDDDGHEGGW 280


>03_02_0910 +
           12317493-12317960,12319678-12319734,12320592-12320666,
           12321219-12321299,12321472-12321546,12321818-12321862,
           12321975-12322064,12322153-12322254,12322366-12322420,
           12324966-12325027,12325521-12325555,12325877-12326115,
           12326219-12328035
          Length = 1066

 Score = 29.5 bits (63), Expect = 4.5
 Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 1/50 (2%)

Query: 132 IYKAAVRTTKAINQGFRTTKG-RGLGSRFDDNRLTLRIHRGRGSNRPHGS 180
           +++ A+   + + QG   T+  +G G + DDN    ++ R  G  RP  S
Sbjct: 318 VHEDAISRVQRLTQGIWGTQNIQGPGGQMDDNEAEQQLRRNDGEKRPRRS 367


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.327    0.141    0.476 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,583,818
Number of Sequences: 37544
Number of extensions: 419689
Number of successful extensions: 959
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 957
Number of HSP's gapped (non-prelim): 4
length of query: 368
length of database: 14,793,348
effective HSP length: 83
effective length of query: 285
effective length of database: 11,677,196
effective search space: 3328000860
effective search space used: 3328000860
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 61 (28.7 bits)