Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002315-TA|BGIBMGA002315-PA|undefined
(364 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC688.11 |end4|sla2|Huntingtin-interacting protein homolog|Sch... 30 0.59
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1... 30 0.59
SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog 1|Schizosa... 29 0.78
SPBC1683.04 |||glycosyl hydrolase family 3|Schizosaccharomyces p... 29 1.0
SPBC543.02c |||DNAJ/TPR domain protein DNAJC7 family|Schizosacch... 29 1.4
SPAC19D5.06c |din1||Dhp1p-interacting protein Din1|Schizosacchar... 29 1.4
SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces po... 28 1.8
SPAC6F12.09 |rdp1|rdr1|RNA-directed RNA polymerase Rdp1|Schizosa... 28 2.4
SPAC1296.01c ||SPAC22F3.01|phosphoacetylglucosamine mutase |Schi... 28 2.4
SPBC4B4.09 |usp105|prp39|U1 snRNP-associated protein Usp105|Schi... 27 3.1
SPAC26H5.07c |||seven transmembrane receptor-like protein|Schizo... 27 3.1
SPBC725.02 |mpr1|spy1|response regulator phosphotransferase |Sch... 27 4.2
SPBC1289.05c |vma10||V-type ATPase subunit G|Schizosaccharomyces... 27 4.2
SPBC3D6.09 |dpb4||DNA polymerase epsilon subunit Dpb4 |Schizosac... 27 4.2
SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces ... 27 5.5
SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein lig... 27 5.5
SPAC17H9.06c |||conserved fungal protein|Schizosaccharomyces pom... 27 5.5
SPAC25A8.01c ||snf2SR|fun thirty related protein Fft3|Schizosacc... 27 5.5
SPAC4G8.12c |||alpha-1,2-mannosyltransferase |Schizosaccharomyce... 26 7.3
SPAC1F3.01 |rrp6|SPAC3H8.11|exosome subunit Rrp6 |Schizosaccharo... 26 7.3
SPBC14C8.07c |cdc18||MCM loader|Schizosaccharomyces pombe|chr 2|... 26 7.3
SPAC13A11.01c |rga8|SPAC2F7.18c|GTPase activating protein Rga8 |... 26 7.3
SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces... 26 7.3
SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr ... 26 7.3
SPAC8F11.05c |mug130||sequence orphan|Schizosaccharomyces pombe|... 26 9.6
SPAC4H3.03c |||glucan 1,4-alpha-glucosidase |Schizosaccharomyces... 26 9.6
>SPAC688.11 |end4|sla2|Huntingtin-interacting protein
homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1092
Score = 29.9 bits (64), Expect = 0.59
Identities = 18/79 (22%), Positives = 40/79 (50%), Gaps = 2/79 (2%)
Query: 256 LNDVGCAVENGVDDKETNIYES-NDPMANMYDSVHVNNENVIANQSVKTKLPVEDYLDPV 314
L + ++E + +N+ N +A++ D++H + + +AN V+ K Y +
Sbjct: 568 LQEKAASLERNKSSEVSNLLSRYNTEVAHLEDALH-SKDRELANLGVELKSTENRYRQLL 626
Query: 315 QINKDYLDVQYKQKDDSIL 333
Q ++ L++Q D+S+L
Sbjct: 627 QEKEEELEIQKAAVDESLL 645
>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1841
Score = 29.9 bits (64), Expect = 0.59
Identities = 17/71 (23%), Positives = 36/71 (50%), Gaps = 3/71 (4%)
Query: 233 MVKIQELIQSFRMPFFGGKKTDPLNDVGCAVENGVD---DKETNIYESNDPMANMYDSVH 289
+V +EL Q F + + +++V + N D +K+ NIYES + + + H
Sbjct: 493 IVACEELEQGFDLDILDSLRESGIHEVIQLLRNFPDQQLEKQLNIYESEEERRTISQTTH 552
Query: 290 VNNENVIANQS 300
+ ++ ++N+S
Sbjct: 553 EDVDSFMSNES 563
>SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog
1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 941
Score = 29.5 bits (63), Expect = 0.78
Identities = 19/90 (21%), Positives = 43/90 (47%), Gaps = 3/90 (3%)
Query: 5 IIYVFDNFLSQDVTEGIVKLWRPQSNAKKFIAFLEDLKRDPDKYLITNESIDEKSEAEMA 64
++ + DNF +T+ I L P ++ F L ++ + + N ++DE + +
Sbjct: 445 LLKMADNF---SITKEIHSLLSPLESSSAFRLLLLNMHPHDELKQLINNAVDENALMKQK 501
Query: 65 LIESQYQTVKKKGTEELVNVNNSIEDLLKK 94
+ E + V + EE++ N+ +++KK
Sbjct: 502 INEEEETEVIAQEAEEILQDENAQVEIVKK 531
>SPBC1683.04 |||glycosyl hydrolase family 3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 832
Score = 29.1 bits (62), Expect = 1.0
Identities = 16/58 (27%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Query: 52 NESI-DEKSEAEMALIESQYQTVKKKGTEELVNVNNSIEDLLKKWVPVKSFLYRNQPK 108
+ESI DE+++ + L++ +Q + + EL N ++ + + LKK+ L +N+ K
Sbjct: 266 SESILDERAKNVLKLVKHSWQNTEAENHCELNNDSSCLREALKKFASQSIVLLKNKKK 323
>SPBC543.02c |||DNAJ/TPR domain protein DNAJC7
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 476
Score = 28.7 bits (61), Expect = 1.4
Identities = 41/173 (23%), Positives = 74/173 (42%), Gaps = 14/173 (8%)
Query: 30 NAKKFIAFLEDLKRDPD----KYLI--TNESIDEKSEAEMALIESQYQTVKKKGTEELVN 83
NAK F E LK DPD K L + + K++ + YQ +K +E L
Sbjct: 193 NAKAITHFQEALKLDPDCTTAKTLFKQVRKLENTKNQGNDLFRQGNYQDAYEKYSEALQI 252
Query: 84 VNNSIEDLLKKWVPVKSFLYR-NQPKQINKAAPSYLPMKPVSPK----RSKKFFRLNSYE 138
++ E + K ++ + L R +P++ + + L + K R+K L +E
Sbjct: 253 DPDNKETVAKLYMNRATVLLRLKRPEEALSDSDNALAIDSSYLKGLKVRAKAHEALEKWE 312
Query: 139 YPLFDLRSRLKQDTTDKYYPMKRTSIFYINKLYKRPEWGTKYKSISTTEEFTD 191
+ D++S ++ D +D + + K KR + YK + ++E TD
Sbjct: 313 EAVRDVQSAIELDASDANLRQELRRLQLELKKSKRKD---HYKILGVSKEATD 362
>SPAC19D5.06c |din1||Dhp1p-interacting protein
Din1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 352
Score = 28.7 bits (61), Expect = 1.4
Identities = 11/34 (32%), Positives = 20/34 (58%)
Query: 176 WGTKYKSISTTEEFTDKYAEDHLYEDLNYNEIPE 209
WG K+++IST E D + D + + N + +P+
Sbjct: 145 WGYKFEAISTLPEIWDACSRDQIEQRDNQDVVPD 178
>SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1159
Score = 28.3 bits (60), Expect = 1.8
Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Query: 68 SQYQTVKKKGTEELVNVNNSIEDLLKKWVPVKSFLYRNQPKQINKAAPSYLPMKPVSPKR 127
SQ+Q K + L+N+ S+ D K + + S + +++ + N P + SP
Sbjct: 156 SQHQIATPKSSASLLNILRSLHDEQKNTLNISS-VKQDRITEANPTCEKRKPSRSPSPML 214
Query: 128 SKK 130
SKK
Sbjct: 215 SKK 217
>SPAC6F12.09 |rdp1|rdr1|RNA-directed RNA polymerase
Rdp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1215
Score = 27.9 bits (59), Expect = 2.4
Identities = 17/55 (30%), Positives = 25/55 (45%)
Query: 120 MKPVSPKRSKKFFRLNSYEYPLFDLRSRLKQDTTDKYYPMKRTSIFYINKLYKRP 174
+K +S +R+KKF RL S L + +Y + S +I KLY P
Sbjct: 407 LKKLSKERAKKFLRLILTSKTALINPSELDFTKSFVFYDLSSASSIHIKKLYVTP 461
>SPAC1296.01c ||SPAC22F3.01|phosphoacetylglucosamine mutase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 542
Score = 27.9 bits (59), Expect = 2.4
Identities = 14/41 (34%), Positives = 22/41 (53%)
Query: 44 DPDKYLITNESIDEKSEAEMALIESQYQTVKKKGTEELVNV 84
D ++ L+T E + EK +A +A V+ GTE+ V V
Sbjct: 480 DAEQKLVTPEGLQEKIDALVAKYTGGRAFVRSSGTEDAVRV 520
>SPBC4B4.09 |usp105|prp39|U1 snRNP-associated protein
Usp105|Schizosaccharomyces pombe|chr 2|||Manual
Length = 612
Score = 27.5 bits (58), Expect = 3.1
Identities = 19/72 (26%), Positives = 33/72 (45%), Gaps = 3/72 (4%)
Query: 275 YESNDPM-ANMYDSVHVNNENVIANQSVKTKLPVEDYLDPVQINKDYLDVQYKQKDDSIL 333
+E P+ + Y H NV+ KT+LP +D ++ +YL ++ D S+L
Sbjct: 472 FELEQPLNSKNYTEHHARVSNVMEMIRNKTRLPPRTIMDLTKLYMEYL--CHQSNDPSVL 529
Query: 334 GYIMSIFENRFG 345
+ I + FG
Sbjct: 530 QEYLLIDRDVFG 541
>SPAC26H5.07c |||seven transmembrane receptor-like
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 505
Score = 27.5 bits (58), Expect = 3.1
Identities = 12/32 (37%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Query: 21 IVKLWRPQSNAKKFIAFLEDLKRDPDKYLITN 52
I+ LWRP N ++F A E + +D D++ +T+
Sbjct: 420 ILYLWRPTENNRRF-AMSEQVAQDVDEFEMTS 450
>SPBC725.02 |mpr1|spy1|response regulator phosphotransferase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 295
Score = 27.1 bits (57), Expect = 4.2
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 41 LKRDPDKYLITNESIDEKSEAEMALIESQYQTVKKKGTEELVNVNNSIED 90
L +P +T+ KSE L ++ + GTEE V+++NSI D
Sbjct: 72 LTSNPAYVALTSRISSSKSENNQQLAANETAGAPE-GTEETVDISNSISD 120
>SPBC1289.05c |vma10||V-type ATPase subunit G|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 108
Score = 27.1 bits (57), Expect = 4.2
Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Query: 14 SQDVTEGIVKLWRPQSNAKKFIAFLEDLKRDPDKYLITNESIDEKSEAEMALIESQYQTV 73
++ V IV+ R + A LE KR+ D+Y E +KSE++ + I SQ +
Sbjct: 15 AEKVARNIVEKARQHRTQRLKDARLE-AKREIDEYASKKEEEFKKSESQASGIYSQAEAE 73
Query: 74 KKKGTEE 80
KK ++
Sbjct: 74 SKKQVQD 80
>SPBC3D6.09 |dpb4||DNA polymerase epsilon subunit Dpb4
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 210
Score = 27.1 bits (57), Expect = 4.2
Identities = 16/77 (20%), Positives = 33/77 (42%)
Query: 134 LNSYEYPLFDLRSRLKQDTTDKYYPMKRTSIFYINKLYKRPEWGTKYKSISTTEEFTDKY 193
L+ EYP F + + + KR + ++ + R + + +E D+
Sbjct: 80 LDEIEYPEFSKTLKKHLEAYELALKEKRLKLPNVSDVDNRKKAKIDAHDTTPLDEEKDEL 139
Query: 194 AEDHLYEDLNYNEIPEN 210
E+ + ED+ NE+ +N
Sbjct: 140 EEERIAEDIAQNEVEQN 156
>SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1147
Score = 26.6 bits (56), Expect = 5.5
Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 39 EDLKRDPDKYLITNESIDEKSEAEMALIESQYQTVKKKGTEELVNVNNSIEDLLK 93
++LK DK L+ S + +E E+ + + K + E+L+N + IED L+
Sbjct: 862 QNLKETLDK-LLNGSSDFKNNEIELLHDQIRITNAKLEKREKLINASKYIEDTLR 915
>SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein ligase
E3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1647
Score = 26.6 bits (56), Expect = 5.5
Identities = 12/45 (26%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Query: 178 TKYKSISTTEEFTDKYAEDHLYEDLNYNEIPENTKNFVRDDRISS 222
+ Y + + + ++ D+ +DH+Y+D N + N +DD SS
Sbjct: 197 SNYHTSTDSSQYNDQ--DDHVYDDTNDGTDDDINNNEYKDDESSS 239
>SPAC17H9.06c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 601
Score = 26.6 bits (56), Expect = 5.5
Identities = 24/119 (20%), Positives = 50/119 (42%), Gaps = 5/119 (4%)
Query: 178 TKYKSISTTEEFTDKYAEDHLYEDLNYNEIPENTKNFVRDDRISSCNL-NQTSKPCMVKI 236
T+ S S + T++ + ++ + N + D SS N NQ SKP ++
Sbjct: 67 TQASSSSEPSDNTNRLVPVVIIDNNTPKKEESNAEKLKLDKDSSSVNYENQISKP-LITF 125
Query: 237 QELIQSFRMPFFGGKKTDPLNDVGCAVENGVDDKETNIYESNDPMANMYDSVHVNNENV 295
++ ++ +PF K D N+V N +D + + +++ Y + + N+
Sbjct: 126 SDIHETVNVPFLCLDKHDSKNEVAI---NSHEDSPVCLEDITGSLSSTYGNDSLGESNL 181
>SPAC25A8.01c ||snf2SR|fun thirty related protein
Fft3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 922
Score = 26.6 bits (56), Expect = 5.5
Identities = 21/92 (22%), Positives = 38/92 (41%), Gaps = 2/92 (2%)
Query: 272 TNIYESNDPMANMYDSVHVNNENVIANQSVKTKLPVEDYLDPVQINKDYLDVQYKQKDDS 331
TN E+ D + V + + +S+ K D V +D +D Y D+S
Sbjct: 771 TNAVENGDRVVLFSQFTQVLDILQLVMKSLNLKFLRFDGSTQVDFRQDLIDQFYA--DES 828
Query: 332 ILGYIMSIFENRFGMKRGMCNIILADQANFVP 363
I +++S FG+ N+++ +F P
Sbjct: 829 INVFLLSTKAGGFGINLACANMVILYDVSFNP 860
>SPAC4G8.12c |||alpha-1,2-mannosyltransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 533
Score = 26.2 bits (55), Expect = 7.3
Identities = 20/85 (23%), Positives = 38/85 (44%), Gaps = 12/85 (14%)
Query: 141 LFDLRSRLKQDTTDKYYPMKRTSIFYINKLYKRPEW---GTKYKSIST-------TEEFT 190
+ + R+ + + Y+ + + Y K+Y P W K+ I+T T++
Sbjct: 373 IIEQRNVTTMENCNLYFNPEMPTTIYFWKIYSAPTWMLARPKFSQINTSHLYNYSTKQMI 432
Query: 191 DKYAEDHLYEDLNYNEIP-ENTKNF 214
K+ E + YE++ +P ENT F
Sbjct: 433 SKFWETY-YEEVKVVNLPEENTTEF 456
>SPAC1F3.01 |rrp6|SPAC3H8.11|exosome subunit Rrp6
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 777
Score = 26.2 bits (55), Expect = 7.3
Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 4/51 (7%)
Query: 52 NESIDEKSEAEMALIESQYQTVKKKGTEELVNVNNSIEDLLKKWVPVKSFL 102
NE+I S M LIE V + E++V+V ED+ +W V L
Sbjct: 36 NENIKSVSSRFMRLIELLLSKVDRSRAEDIVDV----EDIDNRWAEVSDTL 82
>SPBC14C8.07c |cdc18||MCM loader|Schizosaccharomyces pombe|chr
2|||Manual
Length = 577
Score = 26.2 bits (55), Expect = 7.3
Identities = 12/36 (33%), Positives = 19/36 (52%)
Query: 99 KSFLYRNQPKQINKAAPSYLPMKPVSPKRSKKFFRL 134
K+ LY N P Q+ + LP P +PK K+ ++
Sbjct: 76 KTDLYPNFPAQLKENKKPKLPTTPQTPKTPKRTIQI 111
>SPAC13A11.01c |rga8|SPAC2F7.18c|GTPase activating protein Rga8
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 777
Score = 26.2 bits (55), Expect = 7.3
Identities = 45/190 (23%), Positives = 74/190 (38%), Gaps = 19/190 (10%)
Query: 5 IIYVFDN-FLSQDVTEGIVKLWRPQSNAKKFIAFLEDLKRDPDKYLITNESIDEKSEAEM 63
+I F N F S+D G+ KL+ N + E +K Y NE EK +
Sbjct: 1 MISSFSNGFWSKDYATGVKKLFDCLDNG---VEENEQVKNLLKLYKEANEEFGEKLQE-- 55
Query: 64 ALIESQYQTVKKKGTEELVNVNNSIEDLLKKWVPVKSFLYRNQPKQINKAAPSYLPMKPV 123
+ + + K + TE+ N + E L + NQ KQ + A L +
Sbjct: 56 -ITKECLKGKKPENTEDGATSNKAFEGLRSE--------IANQGKQHIRIAKD-LETLII 105
Query: 124 SPKRSKKFFRLNSYEYPLFDLRSRLKQDTTDKYYPMKRTSIFYINKLYKRPEW--GTKYK 181
+P + L +++K KYY +K+T Y NK ++ +K
Sbjct: 106 APFSKMSIDHSQKLQTSQQVLTNQIKS-YEKKYYTLKKTKSAYYNKCRNLEDYEEESKES 164
Query: 182 SISTTEEFTD 191
+ +T+E TD
Sbjct: 165 NETTSEAITD 174
>SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1526
Score = 26.2 bits (55), Expect = 7.3
Identities = 29/126 (23%), Positives = 54/126 (42%), Gaps = 6/126 (4%)
Query: 33 KFIAFLEDLKRDPDKYLITNESIDEKSEAEMALIESQYQTVKKKGTEELVNVNNSIEDLL 92
K ++ D K + + +TN+ ++EKS + + + VKK E +++ +L
Sbjct: 996 KLTKYISDYKTEIQEMRLTNQKMNEKSIQQEGSLSESLKRVKKLERENSTLISD--VSIL 1053
Query: 93 KKWVPVKSFLYRNQPKQIN--KAAPSYLPMKPVS-PKRSKKFFRLNSYEYPLFDLRSRLK 149
K+ S L Q IN + +YL PK K+ LN + L+ L++
Sbjct: 1054 KQQKEELSVLKGVQELTINNLEEKVNYLEADVKQLPKLKKELESLNDKD-QLYQLQATKN 1112
Query: 150 QDTTDK 155
++ K
Sbjct: 1113 KELEAK 1118
>SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr
2|||Manual
Length = 962
Score = 26.2 bits (55), Expect = 7.3
Identities = 19/84 (22%), Positives = 39/84 (46%), Gaps = 4/84 (4%)
Query: 228 TSKPCMVK-IQELIQSFRMPFFGGKKTDPLNDVGCAVENGVDDKETNIYESNDPMANMYD 286
+S PC + +L S +P G + L ++ V +++++ ND +
Sbjct: 677 SSLPCSKSSLYQLSLSLCIPLIEGHLRNSLEEILFGVPTELENQKFMSVLRNDKLIK--- 733
Query: 287 SVHVNNENVIANQSVKTKLPVEDY 310
S+H + + I+N V +K P+E +
Sbjct: 734 SIHPGSLSGISNSFVNSKHPIEQW 757
>SPAC8F11.05c |mug130||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 241
Score = 25.8 bits (54), Expect = 9.6
Identities = 12/42 (28%), Positives = 20/42 (47%)
Query: 118 LPMKPVSPKRSKKFFRLNSYEYPLFDLRSRLKQDTTDKYYPM 159
L + P+S K K FR N +++S + +KY P+
Sbjct: 80 LYLSPISKKSEKLIFRFNLNHRGYLEVKSGFRAFIENKYSPL 121
>SPAC4H3.03c |||glucan 1,4-alpha-glucosidase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 649
Score = 25.8 bits (54), Expect = 9.6
Identities = 20/85 (23%), Positives = 37/85 (43%), Gaps = 2/85 (2%)
Query: 55 IDEKSEAEMALIESQYQTVKKKGTEELVNVNNSIEDLLKKWVPVKSFLYRNQPKQINKAA 114
+D + E A+++S Y +KG NN I D +P+ SF+ P+ ++
Sbjct: 473 MDTRDEIYEAIMDSGYNM--EKGFFAQSFENNDILDASVLVMPLVSFISPTDPRFLSTMD 530
Query: 115 PSYLPMKPVSPKRSKKFFRLNSYEY 139
P++ + FR N++ Y
Sbjct: 531 NIMKPLEKDGLMSNGLIFRYNNFVY 555
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.316 0.134 0.389
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,863,640
Number of Sequences: 5004
Number of extensions: 89815
Number of successful extensions: 299
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 290
Number of HSP's gapped (non-prelim): 26
length of query: 364
length of database: 2,362,478
effective HSP length: 74
effective length of query: 290
effective length of database: 1,992,182
effective search space: 577732780
effective search space used: 577732780
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 54 (25.8 bits)
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