GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002315-TA|BGIBMGA002315-PA|undefined
         (364 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0463 + 9586015-9586233,9586330-9586400,9587026-9587116,958...    31   1.4  
08_01_0779 - 7553278-7553631,7553765-7553977,7554132-7554617,755...    31   1.4  
08_02_0270 + 15108178-15108587,15108678-15108774,15109445-151094...    30   3.3  
02_03_0032 + 14112354-14112417,14112471-14112549,14114435-141145...    29   5.8  
07_03_0584 - 19690474-19690589,19690763-19690909,19691068-196911...    29   7.7  
04_01_0246 + 3225743-3226473,3226493-3226624,3227580-3227670,322...    29   7.7  

>09_02_0463 +
           9586015-9586233,9586330-9586400,9587026-9587116,
           9587322-9587331,9587796-9587863,9588695-9588847,
           9588931-9589566
          Length = 415

 Score = 31.1 bits (67), Expect = 1.4
 Identities = 14/71 (19%), Positives = 37/71 (52%)

Query: 22  VKLWRPQSNAKKFIAFLEDLKRDPDKYLITNESIDEKSEAEMALIESQYQTVKKKGTEEL 81
           + +W P+ N  K   ++ D+ ++ ++ L+ NE   +K+  + A+      +V  +  + +
Sbjct: 90  LNMWTPKRNKLKICGWIMDMSKNLEETLLVNERNMDKNSLKGAIDHEACSSVVGRTAQTM 149

Query: 82  VNVNNSIEDLL 92
            N  +S++ +L
Sbjct: 150 HNCKSSMDLVL 160


>08_01_0779 -
           7553278-7553631,7553765-7553977,7554132-7554617,
           7554729-7554796,7554918-7555215,7555288-7555364,
           7555703-7555874,7555951-7556021,7557371-7557392
          Length = 586

 Score = 31.1 bits (67), Expect = 1.4
 Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 4/39 (10%)

Query: 168 NKLYKRPEWGTKYKSISTTEEFTDK-YAEDHLYEDLNYN 205
           ++LY RP++ T+YK     + F  K Y EDH++  + YN
Sbjct: 330 SELYNRPDFVTEYKD---AKFFVIKSYTEDHVHRSIKYN 365


>08_02_0270 +
           15108178-15108587,15108678-15108774,15109445-15109492,
           15109583-15109806,15111367-15111463,15111556-15111651,
           15112297-15112544,15112632-15112715,15112787-15113236,
           15114880-15115024,15115116-15115217,15115677-15115769,
           15117308-15117349,15119085-15119113,15119210-15119251,
           15119922-15119997,15120764-15120835,15121208-15121326,
           15121428-15121491,15121576-15123009
          Length = 1323

 Score = 29.9 bits (64), Expect = 3.3
 Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 1/62 (1%)

Query: 170 LYKRPEWGTKYKSISTTEEFTDKYAEDHLYEDLNYNEIPENTKNF-VRDDRISSCNLNQT 228
           L+ RP+W  K+K I+     T      H  EDL Y      T+N  V +   +S N N T
Sbjct: 873 LWSRPDWTQKHKRIAEQHGHTKANVFSHNEEDLVYLFEDRATQNHDVNNKNYTSGNGNFT 932

Query: 229 SK 230
           ++
Sbjct: 933 AE 934


>02_03_0032 +
           14112354-14112417,14112471-14112549,14114435-14114551,
           14114721-14114802,14115734-14115868,14115948-14116123,
           14116219-14116370,14116433-14117622
          Length = 664

 Score = 29.1 bits (62), Expect = 5.8
 Identities = 27/96 (28%), Positives = 47/96 (48%), Gaps = 6/96 (6%)

Query: 238 ELIQSFRMPFFGGKKTDPLNDVGCAVENGVDDKETNIYESNDPMAN-MYDSVHVNN---E 293
           +++  F +    G KT   ++ G ++ + VD K T   E    + N   DS++V++   +
Sbjct: 434 KILNPFSISQRSGDKTKLCSEGGSSLTD-VDSKSTQSVEPPTTICNHTSDSLNVDSLCSD 492

Query: 294 NVIANQSVKTKLPVEDYLDPVQINKDYLDVQYKQKD 329
             +AN +  T       L PVQI  D+L V+ K+ D
Sbjct: 493 QRLANSTAGTTEKASFVL-PVQIKVDHLCVERKKVD 527


>07_03_0584 -
           19690474-19690589,19690763-19690909,19691068-19691116,
           19691240-19691365,19691473-19692651
          Length = 538

 Score = 28.7 bits (61), Expect = 7.7
 Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 4/73 (5%)

Query: 36  AFLEDLKRDPDKYLITNESIDEKSEAEMALIE----SQYQTVKKKGTEELVNVNNSIEDL 91
           A L++  R  +K + +  ++ EK E +  LIE      Y T K K   +++ ++  ++DL
Sbjct: 351 ACLDNGARVLEKLIASAAALVEKIELKRGLIEMNTHESYFTKKAKLDIDILQLDAEVDDL 410

Query: 92  LKKWVPVKSFLYR 104
            KK V V +  YR
Sbjct: 411 KKKLVEVCTCDYR 423


>04_01_0246 +
           3225743-3226473,3226493-3226624,3227580-3227670,
           3228617-3229074,3229342-3229864
          Length = 644

 Score = 28.7 bits (61), Expect = 7.7
 Identities = 16/34 (47%), Positives = 19/34 (55%)

Query: 112 KAAPSYLPMKPVSPKRSKKFFRLNSYEYPLFDLR 145
           +AAP+  P  P  P  S KF   N+Y Y L DLR
Sbjct: 31  EAAPTTPPPPPPPPPFSFKFDFSNTYTYRLEDLR 64


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.316    0.134    0.389 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,005,423
Number of Sequences: 37544
Number of extensions: 418364
Number of successful extensions: 1066
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1062
Number of HSP's gapped (non-prelim): 8
length of query: 364
length of database: 14,793,348
effective HSP length: 83
effective length of query: 281
effective length of database: 11,677,196
effective search space: 3281292076
effective search space used: 3281292076
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 61 (28.7 bits)