GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002314-TA|BGIBMGA002314-PA|IPR006616|Protein of unknown
function DM9
         (248 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY994095-1|AAX86008.1|  144|Anopheles gambiae unknown protein.        113   6e-27
AJ439353-4|CAD27926.1|  338|Anopheles gambiae putative hox prote...    26   0.90 

>AY994095-1|AAX86008.1|  144|Anopheles gambiae unknown protein.
          Length = 144

 Score =  113 bits (271), Expect = 6e-27
 Identities = 60/127 (47%), Positives = 82/127 (64%), Gaps = 3/127 (2%)

Query: 119 VVGGHEGWDGSPLWVIRAWHMGDMIPGKLSVRHNAASIMYNGKEIPVQNIEVLCARPEDL 178
           V GG +  DG+ ++V RA H GD++P K+     AA + Y G+E  V+++EVL  +   L
Sbjct: 19  VPGGVDS-DGAQIFVGRAHHAGDLLPAKVIPDKTAAYVAYGGQETLVEHVEVLVHK--QL 75

Query: 179 RWVSASNGSVPPGAVLGGRTASGETLYVGRARYQLSVTPGKVHPSHKTCYIGFGGTEVAL 238
            W +AS G VP GAV+GG T+ GE LYVGRA ++ S T GKV  SH   YI +GG EV++
Sbjct: 76  IWDTASAGQVPLGAVVGGHTSDGEILYVGRAYHEGSQTIGKVQCSHNCIYIPYGGAEVSV 135

Query: 239 KMYDVLC 245
             Y+VLC
Sbjct: 136 PTYEVLC 142



 Score = 56.4 bits (130), Expect = 7e-10
 Identities = 35/93 (37%), Positives = 45/93 (48%), Gaps = 5/93 (5%)

Query: 82  YHGESSNVDQVSVVDHPGEYDWVXXXXXXXSSLTGRAVVGGHEGWDGSPLWVIRAWHMGD 141
           Y G+ + V+ V V+ H  +  W          +   AVVGGH   DG  L+V RA+H G 
Sbjct: 57  YGGQETLVEHVEVLVHK-QLIW---DTASAGQVPLGAVVGGHTS-DGEILYVGRAYHEGS 111

Query: 142 MIPGKLSVRHNAASIMYNGKEIPVQNIEVLCAR 174
              GK+   HN   I Y G E+ V   EVLC R
Sbjct: 112 QTIGKVQCSHNCIYIPYGGAEVSVPTYEVLCER 144



 Score = 49.2 bits (112), Expect = 1e-07
 Identities = 23/66 (34%), Positives = 35/66 (53%), Gaps = 1/66 (1%)

Query: 180 WVSAS-NGSVPPGAVLGGRTASGETLYVGRARYQLSVTPGKVHPSHKTCYIGFGGTEVAL 238
           W+  S +G  PP  V GG  + G  ++VGRA +   + P KV P     Y+ +GG E  +
Sbjct: 5   WIPTSVHGPYPPHMVPGGVDSDGAQIFVGRAHHAGDLLPAKVIPDKTAAYVAYGGQETLV 64

Query: 239 KMYDVL 244
           +  +VL
Sbjct: 65  EHVEVL 70


>AJ439353-4|CAD27926.1|  338|Anopheles gambiae putative hox protein
           protein.
          Length = 338

 Score = 26.2 bits (55), Expect = 0.90
 Identities = 17/64 (26%), Positives = 30/64 (46%), Gaps = 4/64 (6%)

Query: 141 DMIPGKLSVRHNAASIMYNGKEIPVQNIEVLCARPEDLRWVSASNGSVPPGAVLGGRTAS 200
           D+ P KLS + +    +Y G++ P +    L  RP +    S ++GS    A  G   ++
Sbjct: 112 DVSPPKLSPKEDYYRKLYRGEKTPERYAPYLAVRPVE----SLTSGSNVAAAAAGASAST 167

Query: 201 GETL 204
             T+
Sbjct: 168 PPTI 171


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.316    0.134    0.427 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 210,895
Number of Sequences: 2123
Number of extensions: 8027
Number of successful extensions: 22
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 17
Number of HSP's gapped (non-prelim): 5
length of query: 248
length of database: 516,269
effective HSP length: 62
effective length of query: 186
effective length of database: 384,643
effective search space: 71543598
effective search space used: 71543598
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 47 (23.0 bits)