GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002313-TA|BGIBMGA002313-PA|undefined
         (238 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC14C8.07c |cdc18||MCM loader|Schizosaccharomyces pombe|chr 2|...    30   0.34 
SPAC630.15 |mug177||sequence orphan|Schizosaccharomyces pombe|ch...    29   0.79 
SPAC6C3.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    26   5.6  

>SPBC14C8.07c |cdc18||MCM loader|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 577

 Score = 29.9 bits (64), Expect = 0.34
 Identities = 15/55 (27%), Positives = 30/55 (54%), Gaps = 2/55 (3%)

Query: 175 WTISLHSPPLRIDTDFTPVLMNPEKHVRFSAGELKDRRSDLIKSFVWPALMDGNR 229
           ++I + + P R  T  +     P K +++  GEL++ ++DL  +F  PA +  N+
Sbjct: 39  FSIEIPTTPSRKRTLASSHFQTPTKRIKYELGELQEEKTDLYPNF--PAQLKENK 91


>SPAC630.15 |mug177||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 105

 Score = 28.7 bits (61), Expect = 0.79
 Identities = 15/30 (50%), Positives = 23/30 (76%), Gaps = 1/30 (3%)

Query: 73  KYKIVFSVVVLSFRAVISLRDRRLSEVKAL 102
           KYK+VFS+  +SFR  + L DR+LS V+++
Sbjct: 51  KYKLVFSLYRVSFRR-MRLNDRQLSCVESV 79


>SPAC6C3.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 269

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 15/46 (32%), Positives = 23/46 (50%)

Query: 88  VISLRDRRLSEVKALLGVNEETKANEATVSRLIVAATRMLQETAHS 133
           V  L+D R+     +  + E   A+E TV  + +A  + LQ T HS
Sbjct: 51  VQDLKDTRMELNNMIRILTEAMAAHEWTVDNVNIADIQSLQSTIHS 96


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.320    0.132    0.386 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 724,475
Number of Sequences: 5004
Number of extensions: 20506
Number of successful extensions: 31
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 29
Number of HSP's gapped (non-prelim): 3
length of query: 238
length of database: 2,362,478
effective HSP length: 71
effective length of query: 167
effective length of database: 2,007,194
effective search space: 335201398
effective search space used: 335201398
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 52 (25.0 bits)