GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002313-TA|BGIBMGA002313-PA|undefined
         (238 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_3240| Best HMM Match : Sec8_exocyst (HMM E-Value=0.48)              77   2e-14
SB_43531| Best HMM Match : TPR_MLP1_2 (HMM E-Value=0.97)               31   1.1  
SB_57763| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.8  

>SB_3240| Best HMM Match : Sec8_exocyst (HMM E-Value=0.48)
          Length = 643

 Score = 76.6 bits (180), Expect = 2e-14
 Identities = 51/169 (30%), Positives = 88/169 (52%), Gaps = 9/169 (5%)

Query: 72  LKYKIVFSVVVLSFRAVISLRDRRLSEVKALLGVNEETKANEATVSRLIVAATRMLQETA 131
           +K K++FSVVV++FR V      ++  VK +L + EE ++ +A      ++A    + +A
Sbjct: 482 IKAKLLFSVVVVAFRTVTRALSDKVHRVKKILDIPEERRSQQAEEINEQISA--YFRSSA 539

Query: 132 HSFPLGDAERTVVNQVLNTLREYPCXXXXXXXXXXXXXXXXXXWTISLHSPPLRIDTDFT 191
            +F +   +R V +Q+  TL ++P                   W +S+ +PP+ I+ + T
Sbjct: 540 SNFNINGIKRDVSSQLWKTLYDFPELQVCMKLQLFIEECVDVAWRLSVQTPPMVIEYEST 599

Query: 192 PVLMNPEKHVRFSAGELKDRRSDLIKSFVWPALMD-GNRCV-FRAVVLT 238
             + + +KH RF      D  +D IK +VWPALMD  N  V ++ VV+T
Sbjct: 600 --VFSGKKHTRFYT---SDMEADNIKFYVWPALMDKDNETVHYKGVVVT 643


>SB_43531| Best HMM Match : TPR_MLP1_2 (HMM E-Value=0.97)
          Length = 431

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 17/64 (26%), Positives = 31/64 (48%), Gaps = 3/64 (4%)

Query: 175 WTISLHSPPLRIDTDFTPVLMNPEKHVRFSAGELKDRRSDLIKSFVWPALMDGNRCVFRA 234
           W++    PP+ I       ++N  ++ R    E     + +++ FVWPALM   + V + 
Sbjct: 361 WSMVALQPPIDIAIALDGDIINEARYRRSYNSEFS---ATVVEHFVWPALMRDGKVVAKG 417

Query: 235 VVLT 238
            V+T
Sbjct: 418 EVVT 421


>SB_57763| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 351

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 2/60 (3%)

Query: 75  KIVFSVVVLSFRAVISLRDRRLSEVKALLGVNEETKANEATVSRLIVAATRMLQETAHSF 134
           K + S +VL    VIS+R   +     LL +  +   NE+ +  ++ A  +ML+ +  SF
Sbjct: 36  KEIASFLVLRHGLVISVRT--VKRTLKLLYLRRDRSGNESPMEAIVYAVVQMLENSCGSF 93


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.320    0.132    0.386 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,298,145
Number of Sequences: 59808
Number of extensions: 146921
Number of successful extensions: 273
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 271
Number of HSP's gapped (non-prelim): 3
length of query: 238
length of database: 16,821,457
effective HSP length: 80
effective length of query: 158
effective length of database: 12,036,817
effective search space: 1901817086
effective search space used: 1901817086
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 59 (27.9 bits)