GeneModel BLAST Result against fruitfly

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002313-TA|BGIBMGA002313-PA|undefined
         (238 letters)

Database: fruitfly 
           52,641 sequences; 24,830,863 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014297-4548|AAF57014.2|  539|Drosophila melanogaster CG11498-P...   121   1e-27

>AE014297-4548|AAF57014.2|  539|Drosophila melanogaster CG11498-PA
           protein.
          Length = 539

 Score =  121 bits (291), Expect = 1e-27
 Identities = 73/175 (41%), Positives = 99/175 (56%), Gaps = 13/175 (7%)

Query: 72  LKYKIVFSVVV--------LSFRAVISLRDRRLSEVKALLGVNEETKANEATVSRLIVAA 123
           LK KI+FS++V        LSFR    +R+R++ EV+ +L    ++ ++E T+S L  + 
Sbjct: 370 LKGKILFSMIVVSLKYLAFLSFRLCHGMRERKVLEVRRVLNCPLDS-SSETTLS-LDRSV 427

Query: 124 TRMLQETAHSFPLGDAERTVVNQVLNTLREYPCXXXXXXXXXXXXXXXXXXWTISLHSPP 183
            + L ETA SFPLG+ ER+V NQVL+TL EYPC                  W +     P
Sbjct: 428 RQHLFETAESFPLGEIERSVFNQVLSTLHEYPCLESCPPLTHYVSACVRLAWRMINQKAP 487

Query: 184 LRIDTDFTPVLMNPEKHVRFSAGELKDRRSDLIKSFVWPALMDGNRCVFRAVVLT 238
             +D DF    + PEKH R       DRRSDLIK+F+WPALM  N+C F+AVV T
Sbjct: 488 YYLDMDFNLGFLRPEKHERHPQA---DRRSDLIKAFLWPALMQNNQCAFKAVVAT 539


  Database: fruitfly
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 24,830,863
  Number of sequences in database:  52,641
  
Lambda     K      H
   0.320    0.132    0.386 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,730,411
Number of Sequences: 52641
Number of extensions: 207197
Number of successful extensions: 350
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 346
Number of HSP's gapped (non-prelim): 1
length of query: 238
length of database: 24,830,863
effective HSP length: 83
effective length of query: 155
effective length of database: 20,461,660
effective search space: 3171557300
effective search space used: 3171557300
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 60 (28.3 bits)