GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002313-TA|BGIBMGA002313-PA|undefined
         (238 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U53341-2|AAC69108.2|  645|Caenorhabditis elegans Hypothetical pr...    48   5e-06
AF025464-3|AAB71016.3|  949|Caenorhabditis elegans Transporter o...    29   2.2  
U53341-3|AAM69115.1|  608|Caenorhabditis elegans Hypothetical pr...    29   2.9  

>U53341-2|AAC69108.2|  645|Caenorhabditis elegans Hypothetical
           protein F49E10.4a protein.
          Length = 645

 Score = 48.4 bits (110), Expect = 5e-06
 Identities = 41/162 (25%), Positives = 73/162 (45%), Gaps = 10/162 (6%)

Query: 81  VVLSFRAVIS-LRDRRLSEVKALLGVNEETK-ANEATVSRLIVAATRMLQETAHSFPLGD 138
           ++L++  V   + DR+L+ +KAL  VN   K +NE T+    +++ ++ +E   +   G 
Sbjct: 490 LILTYNVVKEHIEDRKLAVLKALGSVNNNAKESNELTMFEDALSS-QLHKEFTTTKAGGH 548

Query: 139 AERTVVNQVLNTLREYPCXXXXXXXXXXXXXXXXXXWTISLHSPPLRIDTDFTPVLMNPE 198
               +  QV   L EYP                   W I    P  ++  ++      P 
Sbjct: 549 IAEDLCQQVFKKLDEYPGVEECLTIHQYIQKCISISWDIQC-CPERKLKLEYDGAEFEPS 607

Query: 199 KHVRFSAGELKDRRSDLIKSFVWPALMD--GNRCVFRAVVLT 238
           +H R   G      + ++ +F+WPAL+D   NR + +A+VLT
Sbjct: 608 RHSR---GAYSGTTNQVV-NFIWPALIDTSDNRVLLKAIVLT 645


>AF025464-3|AAB71016.3|  949|Caenorhabditis elegans Transporter of
           sr proteins protein1 protein.
          Length = 949

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 15/45 (33%), Positives = 23/45 (51%)

Query: 96  LSEVKALLGVNEETKANEATVSRLIVAATRMLQETAHSFPLGDAE 140
           L ++  L+GV E+T  N A V   I + TR +   A   P  +A+
Sbjct: 521 LPQLLTLIGVLEQTTTNGAKVEEAICSLTRAISMIASKLPAHEAK 565


>U53341-3|AAM69115.1|  608|Caenorhabditis elegans Hypothetical
           protein F49E10.4b protein.
          Length = 608

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 22/77 (28%), Positives = 39/77 (50%), Gaps = 3/77 (3%)

Query: 81  VVLSFRAVIS-LRDRRLSEVKALLGVNEETK-ANEATVSRLIVAATRMLQETAHSFPLGD 138
           ++L++  V   + DR+L+ +KAL  VN   K +NE T+      ++++ +E   +   G 
Sbjct: 445 LILTYNVVKEHIEDRKLAVLKALGSVNNNAKESNELTMFE-DALSSQLHKEFTTTKAGGH 503

Query: 139 AERTVVNQVLNTLREYP 155
               +  QV   L EYP
Sbjct: 504 IAEDLCQQVFKKLDEYP 520


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.320    0.132    0.386 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,868,742
Number of Sequences: 27539
Number of extensions: 106231
Number of successful extensions: 168
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 166
Number of HSP's gapped (non-prelim): 3
length of query: 238
length of database: 12,573,161
effective HSP length: 79
effective length of query: 159
effective length of database: 10,397,580
effective search space: 1653215220
effective search space used: 1653215220
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 58 (27.5 bits)