GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002312-TA|BGIBMGA002312-PA|undefined
         (276 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4H3.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    29   0.96 
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch...    28   1.3  
SPAC19E9.02 |fin1||serine/threonine protein kinase Fin1|Schizosa...    28   1.3  
SPBC1685.05 |||serine protease |Schizosaccharomyces pombe|chr 2|...    27   2.9  
SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|...    27   2.9  
SPCC613.08 |||CDK regulator |Schizosaccharomyces pombe|chr 3|||M...    26   6.8  

>SPAC4H3.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 345

 Score = 28.7 bits (61), Expect = 0.96
 Identities = 21/63 (33%), Positives = 27/63 (42%), Gaps = 1/63 (1%)

Query: 173 NELQRHVEVYKQALHK-LEELSPVTVNQDPASSSHQRLLALSHADVERRLIDNKSLLTIV 231
           N      E  K+AL +  EEL    +  DP   +  R L  +  +VER L    S   I 
Sbjct: 173 NSETEQYEKQKEALEEEYEELRNECLKHDPQLDAEIRTLQDTFEEVERTLTKQVSDAKIA 232

Query: 232 DKP 234
           DKP
Sbjct: 233 DKP 235


>SPCC162.08c |nup211||nuclear pore complex associated
            protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1837

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 30/113 (26%), Positives = 57/113 (50%), Gaps = 10/113 (8%)

Query: 140  RRRQLDAAVQGLGTHGLTADSSGTLISLHVAMKNELQRHVEVYKQALHKLEELSPVTVNQ 199
            +R+ ++  +  L  + L  ++   L  LH +  + L + + V +Q  +  E L+ ++ N 
Sbjct: 1138 QRKAMEDEISSLKDYILGLENQNKL--LH-SQFDSLSQQITVLQQ--NSSENLN-ISANL 1191

Query: 200  DPASSSHQRLLALSHADVERRLIDNKSLLTIVDKPALRQLPTLVASLAARVES 252
            +    +  R L +S+   E+ ++DNK  LTI+D   L Q    V SL + V+S
Sbjct: 1192 EAVQDNDLREL-VSYLRHEKEIMDNKYELTILDNRGLNQ---QVKSLQSTVDS 1240


>SPAC19E9.02 |fin1||serine/threonine protein kinase
           Fin1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 722

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 12/35 (34%), Positives = 19/35 (54%)

Query: 171 MKNELQRHVEVYKQALHKLEELSPVTVNQDPASSS 205
           M    QRH++    ++ K+   SPV  N+ P SS+
Sbjct: 355 MDARYQRHMQTVVNSMQKMRVTSPVDHNEQPESST 389


>SPBC1685.05 |||serine protease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 997

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 25/114 (21%), Positives = 49/114 (42%), Gaps = 4/114 (3%)

Query: 87  EVSPRPEIQCESVAWRLVGLLGGDQGSGLRARTSRLASALVHYAPDSRDAIDSRRRQLDA 146
           E+S  PE     +  R++G   G++ S L +  +RL     +Y  D+ +  ++   Q  +
Sbjct: 165 EISLSPESAKVGIDIRIIGNDAGEKLSILSSTLARLDRPAPNYGIDNYNDFNTFYYQAAS 224

Query: 147 AVQGLGTHGLTADSSGTLISLHVAMKN----ELQRHVEVYKQALHKLEELSPVT 196
              G  +     D SG  ++L+    N         ++   +AL  +E  +P+T
Sbjct: 225 GTSGGSSGSPVLDISGAAVALNSGGSNSSASSFYLPLDRVVRALRCIENNTPIT 278


>SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1184

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 14/33 (42%), Positives = 17/33 (51%)

Query: 117 ARTSRLASALVHYAPDSRDAIDSRRRQLDAAVQ 149
           A T R AS LVH  P     I+  +  LDAA +
Sbjct: 250 ASTHRAASELVHGVPMRASGINDPKHDLDAATR 282


>SPCC613.08 |||CDK regulator |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 325

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 10/37 (27%), Positives = 23/37 (62%)

Query: 189 LEELSPVTVNQDPASSSHQRLLALSHADVERRLIDNK 225
           LEE+       +P + +H  LL+ ++ ++E +L+D++
Sbjct: 205 LEEMQWAINENEPYNFTHYLLLSRTYTEIESKLMDDE 241


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.316    0.131    0.363 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,009,777
Number of Sequences: 5004
Number of extensions: 37474
Number of successful extensions: 145
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 140
Number of HSP's gapped (non-prelim): 6
length of query: 276
length of database: 2,362,478
effective HSP length: 72
effective length of query: 204
effective length of database: 2,002,190
effective search space: 408446760
effective search space used: 408446760
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 53 (25.4 bits)