GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002312-TA|BGIBMGA002312-PA|undefined
         (276 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U53341-2|AAC69108.2|  645|Caenorhabditis elegans Hypothetical pr...    56   3e-08
U53341-3|AAM69115.1|  608|Caenorhabditis elegans Hypothetical pr...    54   8e-08
U80438-1|AAB37631.1|  400|Caenorhabditis elegans Hypothetical pr...    33   0.22 
U29381-14|ABI54346.1| 1840|Caenorhabditis elegans Hypothetical p...    30   1.6  
U29381-13|ABI54348.1| 1898|Caenorhabditis elegans Hypothetical p...    30   1.6  
U29381-12|AAM98022.3| 1671|Caenorhabditis elegans Hypothetical p...    30   1.6  
U29381-11|ABI54347.1| 1911|Caenorhabditis elegans Hypothetical p...    30   1.6  
AC025722-1|AAK68507.1|  554|Caenorhabditis elegans Hypothetical ...    29   3.6  
Z81037-1|CAB02745.1|  819|Caenorhabditis elegans Hypothetical pr...    29   4.8  
U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical pr...    29   4.8  

>U53341-2|AAC69108.2|  645|Caenorhabditis elegans Hypothetical
           protein F49E10.4a protein.
          Length = 645

 Score = 56.0 bits (129), Expect = 3e-08
 Identities = 53/192 (27%), Positives = 91/192 (47%), Gaps = 20/192 (10%)

Query: 61  PLDLLIEALPHSAHLIETLLNR--LISLE---VSPRPEIQCESVAWRLVGLLG--GDQGS 113
           P++ L+  +P++  L+E +  +  L ++E   + P  E+ CE +  +LV          S
Sbjct: 59  PVEQLVSEIPYTLPLLEAIYLKCELRTVEDGLILPTKELCCEQLFCQLVWWTAFCEQSNS 118

Query: 114 GLRARTSRLA----------SALVHYAPDSRDAIDSRRRQLDAAVQGLGTHGLTADSSGT 163
            L+   +  A          S +    PD        R QL   ++ LG HGL   SSG 
Sbjct: 119 SLKKHCAMFAEFQPCIATLMSIVGRQCPDLVKRAREDRNQLKTCLESLGCHGLVNCSSG- 177

Query: 164 LISLHVAMKNELQRHVEVYKQALHKLEEL--SPVTVNQDPASSSHQRLLALSHADVERRL 221
           LI +  A+  EL +HVE  K    +++EL   P +   DP+  SHQR +++  + V  RL
Sbjct: 178 LIRMTDAVHLELLKHVENLKIICSQIKELQHDPKSNAPDPSCESHQRQMSMRLSQVFERL 237

Query: 222 IDNKSLLTIVDK 233
             N++L  ++++
Sbjct: 238 KLNETLQCVLEE 249


>U53341-3|AAM69115.1|  608|Caenorhabditis elegans Hypothetical
           protein F49E10.4b protein.
          Length = 608

 Score = 54.4 bits (125), Expect = 8e-08
 Identities = 38/114 (33%), Positives = 59/114 (51%), Gaps = 3/114 (2%)

Query: 122 LASALVHYAPDSRDAIDSRRRQLDAAVQGLGTHGLTADSSGTLISLHVAMKNELQRHVEV 181
           L S +    PD        R QL   ++ LG HGL   SSG LI +  A+  EL +HVE 
Sbjct: 92  LMSIVGRQCPDLVKRAREDRNQLKTCLESLGCHGLVNCSSG-LIRMTDAVHLELLKHVEN 150

Query: 182 YKQALHKLEEL--SPVTVNQDPASSSHQRLLALSHADVERRLIDNKSLLTIVDK 233
            K    +++EL   P +   DP+  SHQR +++  + V  RL  N++L  ++++
Sbjct: 151 LKIICSQIKELQHDPKSNAPDPSCESHQRQMSMRLSQVFERLKLNETLQCVLEE 204


>U80438-1|AAB37631.1|  400|Caenorhabditis elegans Hypothetical
           protein T19B4.5 protein.
          Length = 400

 Score = 33.1 bits (72), Expect = 0.22
 Identities = 34/171 (19%), Positives = 71/171 (41%), Gaps = 12/171 (7%)

Query: 67  EALPHSAHLIETLLNRLISLEVSPRPEIQCESVAWRLVGLLG--GDQGSGL--RARTSRL 122
           ++ PH+  +++ L N+ + +    RP+ +      R+V   G   D   GL    +   +
Sbjct: 92  QSYPHNMDMVQKLQNKNVYMPAQQRPQTRISPAGARIVSFAGRKRDNSDGLPPGVKKMNM 151

Query: 123 ASALVHYAPDSRDAIDSRRRQLDAAVQGLGTHGLTAD--SSGTLISLH--VAMKNELQRH 178
            +A  H     + +   + +Q    +Q +    L +    +    S H  + ++N +++ 
Sbjct: 152 PAARPHQQQTQQQSHLQQGQQSQKNLQPVKVVRLASSVARANPTASEHALIEIENNIKQT 211

Query: 179 VEVYKQALHKLEELSPVTVNQDPASSSHQRLLALSHADVERRLIDNKSLLT 229
           +E  K    +L EL     +QD     + + L +   D+ER    N +L T
Sbjct: 212 IEDAKVDTERLRELQEADFSQD----EYHQYLGMLIMDLERSNEANSTLTT 258


>U29381-14|ABI54346.1| 1840|Caenorhabditis elegans Hypothetical
           protein F35D11.11a protein.
          Length = 1840

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 24/93 (25%), Positives = 43/93 (46%), Gaps = 7/93 (7%)

Query: 132 DSRDAIDSRRRQLDAAVQGLGTHGLTADSSGTLISLHVAMKNELQRHVEVYKQALHKLEE 191
           D R  +D  R   D     L   G+T DS    IS   ++K +L +  +  K+ L ++EE
Sbjct: 729 DLRALLDDLRGNFDKLTNELKQKGVTVDSLNEEIS---SLKEQLNKSEKERKEELLRMEE 785

Query: 192 LSPVTVNQDPASSSHQRLLALSHADVERRLIDN 224
           L      ++ A    +  + L  A+ +R+ ++N
Sbjct: 786 LE----QKNEAEMKEEYEVKLQLAEKDRQGVEN 814


>U29381-13|ABI54348.1| 1898|Caenorhabditis elegans Hypothetical
           protein F35D11.11c protein.
          Length = 1898

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 24/93 (25%), Positives = 43/93 (46%), Gaps = 7/93 (7%)

Query: 132 DSRDAIDSRRRQLDAAVQGLGTHGLTADSSGTLISLHVAMKNELQRHVEVYKQALHKLEE 191
           D R  +D  R   D     L   G+T DS    IS   ++K +L +  +  K+ L ++EE
Sbjct: 729 DLRALLDDLRGNFDKLTNELKQKGVTVDSLNEEIS---SLKEQLNKSEKERKEELLRMEE 785

Query: 192 LSPVTVNQDPASSSHQRLLALSHADVERRLIDN 224
           L      ++ A    +  + L  A+ +R+ ++N
Sbjct: 786 LE----QKNEAEMKEEYEVKLQLAEKDRQGVEN 814


>U29381-12|AAM98022.3| 1671|Caenorhabditis elegans Hypothetical
           protein F35D11.11d protein.
          Length = 1671

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 24/93 (25%), Positives = 43/93 (46%), Gaps = 7/93 (7%)

Query: 132 DSRDAIDSRRRQLDAAVQGLGTHGLTADSSGTLISLHVAMKNELQRHVEVYKQALHKLEE 191
           D R  +D  R   D     L   G+T DS    IS   ++K +L +  +  K+ L ++EE
Sbjct: 489 DLRALLDDLRGNFDKLTNELKQKGVTVDSLNEEIS---SLKEQLNKSEKERKEELLRMEE 545

Query: 192 LSPVTVNQDPASSSHQRLLALSHADVERRLIDN 224
           L      ++ A    +  + L  A+ +R+ ++N
Sbjct: 546 LE----QKNEAEMKEEYEVKLQLAEKDRQGVEN 574


>U29381-11|ABI54347.1| 1911|Caenorhabditis elegans Hypothetical
           protein F35D11.11b protein.
          Length = 1911

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 24/93 (25%), Positives = 43/93 (46%), Gaps = 7/93 (7%)

Query: 132 DSRDAIDSRRRQLDAAVQGLGTHGLTADSSGTLISLHVAMKNELQRHVEVYKQALHKLEE 191
           D R  +D  R   D     L   G+T DS    IS   ++K +L +  +  K+ L ++EE
Sbjct: 729 DLRALLDDLRGNFDKLTNELKQKGVTVDSLNEEIS---SLKEQLNKSEKERKEELLRMEE 785

Query: 192 LSPVTVNQDPASSSHQRLLALSHADVERRLIDN 224
           L      ++ A    +  + L  A+ +R+ ++N
Sbjct: 786 LE----QKNEAEMKEEYEVKLQLAEKDRQGVEN 814


>AC025722-1|AAK68507.1|  554|Caenorhabditis elegans Hypothetical
           protein Y50D4C.2 protein.
          Length = 554

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 17/62 (27%), Positives = 27/62 (43%)

Query: 184 QALHKLEELSPVTVNQDPASSSHQRLLALSHADVERRLIDNKSLLTIVDKPALRQLPTLV 243
           Q L+K + ++P     +  +     L      DVE  +I N  L T  + P + +L TL 
Sbjct: 32  QQLYKTKTIAPALTITNAVTGGFDELGEFGLDDVENLMISNSRLTTFTNFPFMPKLKTLD 91

Query: 244 AS 245
            S
Sbjct: 92  VS 93


>Z81037-1|CAB02745.1|  819|Caenorhabditis elegans Hypothetical
           protein C17E4.2 protein.
          Length = 819

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 24/96 (25%), Positives = 50/96 (52%), Gaps = 13/96 (13%)

Query: 168 HVAMKNELQRHVEVYKQALHKLEELSPVTVNQDPASSS-HQRLLALSHADV--------- 217
           H A   ++ + V+   Q +HKLE++    +N +  S+  ++++ AL+  ++         
Sbjct: 674 HRAANAQINKLVDENSQIVHKLEQIVAKNINLEKKSAELNEKMSALNKINIELMTSERLQ 733

Query: 218 -ERRLIDNKSLLTIVDKPALRQLPTLVASLAARVES 252
            E+RLI    L++ ++K +  +L   V SL  R+E+
Sbjct: 734 CEKRLIVQDKLVSQMEKNS--ELQDEVKSLNLRIEN 767


>U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical
           protein C41A3.1 protein.
          Length = 7829

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 36/137 (26%), Positives = 58/137 (42%), Gaps = 13/137 (9%)

Query: 55  SVVSDLPLDLLIEALPHSAHLIETLL-NRLISLEVSPRPEIQCESVAWRLVGLLGGDQGS 113
           S ++ +  D     +     L +TLL +RL + ++S   + QCE  A   VGLL  D   
Sbjct: 825 SDINVIACDYQFAGVEGEKELWDTLLTSRLTTGKISDIRKKQCEGDAGLEVGLLKQD--- 881

Query: 114 GLRARTSRLASALVHYAPDSRDAIDSRRR-QLDAAVQGLGTHGLTADSSGTL---ISLHV 169
                 S   ++    A D  + +D + R  L+AA   L   GLT+     L   IS H 
Sbjct: 882 -----ISMFDNSFFAIAKDEAEFLDPQHRLLLNAAYNALEKSGLTSIPDADLFLAISAHS 936

Query: 170 AMKNELQRHVEVYKQAL 186
             +   ++H+    + L
Sbjct: 937 EYRALAEKHINELDERL 953


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.316    0.131    0.363 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,381,693
Number of Sequences: 27539
Number of extensions: 197873
Number of successful extensions: 537
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 531
Number of HSP's gapped (non-prelim): 14
length of query: 276
length of database: 12,573,161
effective HSP length: 80
effective length of query: 196
effective length of database: 10,370,041
effective search space: 2032528036
effective search space used: 2032528036
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 59 (27.9 bits)