GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002311-TA|BGIBMGA002311-PA|IPR001424|Superoxide
dismutase, copper/zinc binding, IPR008388|ATPase, V1 complex, subunit
S1
         (1471 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY920544-1|AAX62142.1|  463|Tribolium castaneum cytochrome P450 ...    25   2.9  
U63132-1|AAB38392.1|  372|Tribolium castaneum decapentaplegic pr...    24   6.7  
U04271-1|AAA03708.1|  490|Tribolium castaneum alpha-amylase I pr...    24   6.7  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    24   6.7  
X06905-1|CAA30009.1|  489|Tribolium castaneum protein ( Triboliu...    24   8.8  

>AY920544-1|AAX62142.1|  463|Tribolium castaneum cytochrome P450
            monooxygenase protein.
          Length = 463

 Score = 25.4 bits (53), Expect = 2.9
 Identities = 13/41 (31%), Positives = 20/41 (48%)

Query: 1197 ERDAQMTETFARLQDIYGAGRVLGILGNSVSQSQSPDYVEG 1237
            E+D ++ E F+R  +   A    GI  NSV +  +  Y  G
Sbjct: 122  EQDVEIKEVFSRFSNDVIATAAFGIRVNSVQEPNNEFYAMG 162


>U63132-1|AAB38392.1|  372|Tribolium castaneum decapentaplegic
           protein protein.
          Length = 372

 Score = 24.2 bits (50), Expect = 6.7
 Identities = 14/38 (36%), Positives = 18/38 (47%)

Query: 368 PKLLDANQVNYMCNTTGDIYNPMELDLKTLPPPGLSTQ 405
           PK+    QV        +I N  E D  +LP PGL T+
Sbjct: 43  PKIEGKVQVPEALKKIYNIQNNFEYDTASLPLPGLYTK 80


>U04271-1|AAA03708.1|  490|Tribolium castaneum alpha-amylase I
           protein.
          Length = 490

 Score = 24.2 bits (50), Expect = 6.7
 Identities = 18/66 (27%), Positives = 24/66 (36%), Gaps = 3/66 (4%)

Query: 827 HPGGFARGYIRMSQLIHNDGSTSD---TVIEVKLRYPGVRDRNYTRNHKWEIFVNPVGVD 883
           HP G  R     +   ++ G   D    +I   +   G     Y   H+W    N VG  
Sbjct: 334 HPYGTTRLMSSFAFDNNDQGPPQDGAGNLISPSINDDGTCGNGYVCEHRWRQIFNMVGFR 393

Query: 884 AAVQVT 889
            AVQ T
Sbjct: 394 NAVQET 399


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10
           protein.
          Length = 2700

 Score = 24.2 bits (50), Expect = 6.7
 Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 4/63 (6%)

Query: 432 GLANELSGAYWDVYLPLQGIYSVVHRSLVLERRPGKR-NVCGTILLYEDGTEYQIQMSGA 490
           GL+  LS A   ++ P+ G       SL  + RPG+   V  ++  YED  EY+ +  G 
Sbjct: 581 GLSYHLSCAENMMFDPMSG---KCEYSLGEKCRPGQIIQVANSLRQYEDLLEYEAKEEGP 637

Query: 491 QVI 493
           +V+
Sbjct: 638 KVV 640


>X06905-1|CAA30009.1|  489|Tribolium castaneum protein ( Tribolium
           castaneum mRNAfor alhpa amylase 3'region. ).
          Length = 489

 Score = 23.8 bits (49), Expect = 8.8
 Identities = 18/66 (27%), Positives = 24/66 (36%), Gaps = 3/66 (4%)

Query: 827 HPGGFARGYIRMSQLIHNDGSTSD---TVIEVKLRYPGVRDRNYTRNHKWEIFVNPVGVD 883
           HP G  R     +   ++ G   D    +I   +   G     Y   H+W    N VG  
Sbjct: 333 HPYGTTRLMSSFAFDNNDQGPPQDDAGNLISPSINDDGTCGNGYVCEHRWRQIFNMVGFR 392

Query: 884 AAVQVT 889
            AVQ T
Sbjct: 393 NAVQGT 398


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.320    0.137    0.418 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 359,416
Number of Sequences: 317
Number of extensions: 16175
Number of successful extensions: 24
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 21
Number of HSP's gapped (non-prelim): 6
length of query: 1471
length of database: 114,650
effective HSP length: 66
effective length of query: 1405
effective length of database: 93,728
effective search space: 131687840
effective search space used: 131687840
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 49 (23.8 bits)